C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 4933427D14 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020807 4933427D14Rik 10090 - 11:72153929-72207459 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000108505 4933427D14Rik-003 72195375-72207431 protein_coding
  ENSMUST00000108506 4933427D14Rik-001 72154097-72203771 protein_coding
  ENSMUST00000131546 4933427D14Rik-002 72153930-72207267 nonsense_mediated_decay
  ENSMUST00000142530 4933427D14Rik-004 72153929-72207459 nonsense_mediated_decay
  ENSMUST00000144553 4933427D14Rik-006 72198610-72202612 processed_transcript
  ENSMUST00000151411 4933427D14Rik-008 72153929-72155303 processed_transcript
  ENSMUST00000154093 4933427D14Rik-005 72198363-72207220 processed_transcript
  ENSMUST00000156696 4933427D14Rik-007 72155393-72175238 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108505ENSMUST00000108506ENSMUST00000131546ENSMUST00000142530
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108505 N/A 2.627±0.71 N/A N/A 1.802±0.07 1.390±0.14 0.561±0.00 0.842±0.00 N/A 2.207±0.35 N/A 3.650±1.22 N/A N/A
ENSMUST00000108506 0.779±0.14 N/A 0.786±0.00 4.191±1.52 N/A N/A N/A N/A 0.377±0.17 0.475±0.06 0.104±0.02 1.438±0.72 0.674±0.22 N/A
ENSMUST00000131546 1.217±0.04 0.869±0.20 1.210±0.00 2.387±0.67 1.241±0.00 0.699±0.24 0.237±0.06 0.652±0.30 0.370±0.20 N/A 0.160±0.00 2.378±0.81 0.767±0.34 4.469±0.45
ENSMUST00000142530 1.593±0.85 0.763±0.00 3.074±0.02 4.995±0.67 0.578±0.23 1.088±0.62 0.405±0.00 2.017±0.71 0.657±0.25 1.349±0.91 0.162±0.01 1.976±1.24 1.474±0.00 2.786±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SQ CIL_0006SQ_0003 CGP 11:72047528-72207459
CIL_0001B4 CIL_0001B4_0002 CGP 11:72153929-72210015

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034227 si:dkey-243i1.1 si:dkey-243i1.1 protein_coding Danio_rerio
ENSG00000198920 KIAA0753 KIAA0753 protein_coding Homo_sapiens

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