C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021013 Ttc8 10090 + 12:98920574-98983238 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079146 Ttc8-002 98920612-98983238 protein_coding
  ENSMUST00000085109 Ttc8-001 98920574-98983232 protein_coding
  ENSMUST00000124514 Ttc8-005 98943319-98970724 processed_transcript
  ENSMUST00000132878 Ttc8-003 98920820-98961492 protein_coding
  ENSMUST00000139298 Ttc8-004 98974498-98979885 processed_transcript
  ENSMUST00000168255 Ttc8-006 98974469-98982562 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085109ENSMUST00000124514ENSMUST00000132878ENSMUST00000139298ENSMUST00000168255
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085109 6.382±1.77 3.607±0.66 7.512±1.25 5.522±2.07 3.302±0.32 0.814±0.38 0.772±0.17 6.775±1.45 1.264±0.32 3.051±0.81 1.035±0.26 5.249±1.47 2.002±0.72 4.869±1.88
ENSMUST00000124514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.837±0.20 5.676±0.40 N/A 0.859±0.00
ENSMUST00000132878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.764±0.00 N/A N/A N/A
ENSMUST00000139298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.452±1.07 N/A N/A
ENSMUST00000168255 N/A N/A N/A N/A 4.153±0.18 0.978±0.28 1.732±0.00 7.972±1.36 1.540±0.00 N/A 1.294±0.00 8.124±0.50 2.097±0.28 3.624±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KH CIL_0004KH_0002 CGP 12:98786604-98983238
CIL_0004KI CIL_0004KI_0002 CGP 12:98920574-99450111

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001103 IEA RNA polymerase II repressing transcription factor binding
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005886 IEA plasma membrane
GO:0005929 IEA cilium
GO:0007411 IGI axon guidance
GO:0007608 IMP sensory perception of smell
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0021772 IMP olfactory bulb development
GO:0032391 IDA photoreceptor connecting cilium
GO:0032880 IMP regulation of protein localization
GO:0034464 IDA BBSome
GO:0035058 IEA nonmotile primary cilium assembly
GO:0035264 IMP multicellular organism growth
GO:0036064 ISO ciliary basal body
GO:0042384 IMP cilium assembly
GO:0045444 IEP fat cell differentiation
GO:0048560 IEA establishment of anatomical structure orientation
GO:0060219 IMP camera-type eye photoreceptor cell differentiation
GO:0061326 IMP renal tubule development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044689 ttc8 tetratricopeptide repeat domain 8 protein_coding Danio_rerio
ENSG00000165533 TTC8 tetratricopeptide repeat domain 8 protein_coding Homo_sapiens

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