C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin beta, erythrocytic
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021061 Sptb 10090 - 12:76580488-76710547 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021458 Sptb-001 76580488-76710547 protein_coding
  ENSMUST00000166101 Sptb-002 76596130-76710023 protein_coding
  ENSMUST00000170532 Sptb-004 76583231-76584086 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021458ENSMUST00000166101
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021458 0.346±0.15 0.842±0.21 1.016±0.00 17.145±23.99 2.204±1.89 0.194±0.09 9.444±1.06 0.345±0.11 0.034±0.01 0.924±0.51 28.871±9.38 1.274±0.65 0.238±0.09 0.415±0.02
ENSMUST00000166101 0.120±0.00 0.535±0.05 N/A 0.747±0.56 0.213±0.04 0.103±0.02 N/A 0.421±0.08 16.102±17.51 0.234±0.08 N/A 1.890±0.76 1.159±0.92 0.854±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010L CIL_00010L_0002 CGP 12:76533560-76710547

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005543 IEA phospholipid binding
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006779 IMP porphyrin-containing compound biosynthetic process
GO:0007009 IMP plasma membrane organization
GO:0008091 IEA spectrin
GO:0009986 IEA cell surface
GO:0014731 IMP spectrin-associated cytoskeleton
GO:0016020 IDA membrane
GO:0030097 IMP hemopoiesis
GO:0030506 IEA ankyrin binding
GO:0030863 IDA cortical cytoskeleton
GO:0043234 IEA protein complex
GO:0046982 IPI protein heterodimerization activity
GO:0051015 IDA actin filament binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030490 sptb spectrin, beta, erythrocytic protein_coding Danio_rerio
ENSG00000070182 SPTB spectrin, beta, erythrocytic protein_coding Homo_sapiens

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