C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin beta, erythrocytic
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021458 Sptb-001 ENSMUSG00000021061 10090 - 12:76580488-76710547 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021458
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021458 0.346±0.15 0.842±0.21 1.016±0.00 17.145±23.99 2.204±1.89 0.194±0.09 9.444±1.06 0.345±0.11 0.034±0.01 0.924±0.51 28.871±9.38 1.274±0.65 0.238±0.09 0.415±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010L CIL_00010L_0002 CGP 12:76533560-76710547

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005543 IEA phospholipid binding
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006779 IMP porphyrin-containing compound biosynthetic process
GO:0007009 IMP plasma membrane organization
GO:0008091 IEA spectrin
GO:0009986 IEA cell surface
GO:0014731 IMP spectrin-associated cytoskeleton
GO:0016020 IDA membrane
GO:0030097 IMP hemopoiesis
GO:0030506 IEA ankyrin binding
GO:0030863 IDA cortical cytoskeleton
GO:0043234 IEA protein complex
GO:0046982 IPI protein heterodimerization activity
GO:0051015 IDA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000049651 CABZ01070007.1-201 protein_coding Danio_rerio 2e-33 150
ENST00000247226 PLEKHG3-004 protein_coding Homo_sapiens 0 303
ENST00000309996 SPTBN2-201 protein_coding Homo_sapiens 0 736
ENST00000333896 SPTBN1-002 protein_coding Homo_sapiens 0 894
ENST00000338932 SPTBN4-201 protein_coding Homo_sapiens 0 514
ENST00000342835 SPTB-002 processed_transcript Homo_sapiens 0 719
ENST00000352632 SPTBN4-001 protein_coding Homo_sapiens 0 514
ENST00000356805 SPTBN1-001 protein_coding Homo_sapiens 0 942
ENST00000389720 SPTB-007 protein_coding Homo_sapiens 0 7119
ENST00000389721 SPTB-004 protein_coding Homo_sapiens 0 7278
ENST00000389722 SPTB-201 protein_coding Homo_sapiens 0 8028
ENST00000389980 SPTBN1-003 protein_coding Homo_sapiens 0 942
ENST00000392025 SPTBN4-202 protein_coding Homo_sapiens 0 514
ENST00000496323 SPTBN1-004 retained_intron Homo_sapiens 0 195
ENST00000529997 SPTBN2-003 protein_coding Homo_sapiens 0 736
ENST00000533211 SPTBN2-001 protein_coding Homo_sapiens 0 736
ENST00000542694 SPTB-006 retained_intron Homo_sapiens 0 315
ENST00000553938 SPTB-003 protein_coding Homo_sapiens 0 2828
ENST00000556227 SPTB-005 retained_intron Homo_sapiens 0 719
ENST00000556626 SPTB-001 protein_coding Homo_sapiens 0 8106
ENST00000595535 SPTBN4-003 protein_coding Homo_sapiens 0 514
ENST00000598249 SPTBN4-011 protein_coding Homo_sapiens 0 514
ENST00000611817 SPTBN2-202 protein_coding Homo_sapiens 0 736
ENST00000615901 SPTBN1-201 protein_coding Homo_sapiens 0 942
ENST00000617502 SPTBN2-203 protein_coding Homo_sapiens 0 736

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