C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin, beta, erythrocytic
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070182 SPTB 9606 - 14:64746283-64879883 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342835 SPTB-002 64748307-64763840 processed_transcript
  ENST00000389720 SPTB-007 64766700-64823094 protein_coding
  ENST00000389721 SPTB-004 64766399-64823127 protein_coding
  ENST00000389722 SPTB-201 64746284-64823148 protein_coding
  ENST00000542694 SPTB-006 64767324-64768213 retained_intron
  ENST00000553938 SPTB-003 64748937-64782550 protein_coding
  ENST00000556227 SPTB-005 64748955-64757541 retained_intron
  ENST00000556626 SPTB-001 64746283-64879883 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389720ENST00000389721ENST00000389722ENST00000553938ENST00000556626
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389720 N/A N/A N/A N/A N/A 4.260±0.00 N/A N/A 0.352±0.00 N/A N/A N/A N/A
ENST00000389721 N/A N/A N/A N/A N/A 1.286±0.00 N/A N/A 0.961±0.00 17.392±0.00 N/A 3.641±0.91 N/A
ENST00000389722 1.293±0.00 1.084±0.00 5.886±0.00 1.083±0.00 0.921±0.00 7.466±0.00 1.987±0.00 0.565±0.00 N/A 42.869±38.32 1.170±0.00 N/A 1.805±1.44
ENST00000553938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.565±0.00
ENST00000556626 N/A N/A 1.728±0.00 0.582±0.00 N/A 7.507±5.76 N/A N/A 0.845±0.00 71.867±0.00 N/A 1.583±0.36 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010L CIL_00010L_0001 CGP 14:64704102-64879883

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 TAS:IEA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0006779 IEA porphyrin-containing compound biosynthetic process
GO:0007009 IEA plasma membrane organization
GO:0007411 TAS axon guidance
GO:0008091 IEA spectrin
GO:0009986 IDA cell surface
GO:0014731 IDA spectrin-associated cytoskeleton
GO:0015629 TAS actin cytoskeleton
GO:0016020 IEA membrane
GO:0030097 IEA hemopoiesis
GO:0030506 IPI ankyrin binding
GO:0030863 IEA cortical cytoskeleton
GO:0031235 TAS intrinsic component of the cytoplasmic side of the plasma membrane
GO:0043234 IDA protein complex
GO:0046982 IEA protein heterodimerization activity
GO:0051015 IDA actin filament binding
GO:0051693 IEA actin filament capping

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030490 sptb spectrin, beta, erythrocytic protein_coding Danio_rerio
ENSMUSG00000021061 Sptb spectrin beta, erythrocytic protein_coding Mus_musculus

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