C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 27
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021326 Trim27 10090 + 13:21179445-21194724 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021761 Trim27-001 21180213-21194724 protein_coding
  ENSMUST00000124052 Trim27-002 21179445-21180416 processed_transcript
  ENSMUST00000124794 Trim27-003 21189861-21190420 retained_intron
  ENSMUST00000139287 Trim27-004 21190092-21192475 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021761ENSMUST00000124052ENSMUST00000139287
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021761 5.836±3.60 20.547±14.35 6.276±0.30 5.519±3.64 7.323±1.16 9.712±5.01 1.296±0.78 4.943±1.89 5.368±3.51 5.088±1.87 1.880±0.62 16.151±14.97 11.179±6.02 27.093±12.92
ENSMUST00000124052 N/A 47.635±0.00 N/A N/A N/A 23.411±0.00 N/A N/A N/A N/A N/A 46.002±8.67 N/A 44.537±0.00
ENSMUST00000139287 N/A N/A N/A 6.127±0.00 N/A N/A N/A N/A N/A N/A 5.318±1.12 27.709±9.72 38.881±20.97 36.481±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISO negative regulation of transcription from RNA polymerase II promoter
GO:0002820 ISS negative regulation of adaptive immune response
GO:0003677 IEA DNA binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 ISO nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005768 ISS endosome
GO:0006351 IEA transcription, DNA-templated
GO:0006469 ISS negative regulation of protein kinase activity
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0030904 ISS retromer complex
GO:0031965 ISO nuclear membrane
GO:0032720 ISS negative regulation of tumor necrosis factor production
GO:0032897 IDA negative regulation of viral transcription
GO:0034314 ISS Arp2/3 complex-mediated actin nucleation
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0045087 IDA innate immune response
GO:0045814 ISO negative regulation of gene expression, epigenetic
GO:0051091 IEA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0070206 IEA protein trimerization
GO:0070534 ISS protein K63-linked ubiquitination
GO:0072643 ISS interferon-gamma secretion
GO:0090281 ISS negative regulation of calcium ion import
GO:1900041 ISS negative regulation of interleukin-2 secretion
GO:1902187 IDA negative regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000204713 TRIM27 tripartite motif containing 27 protein_coding Homo_sapiens

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