C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021761 Trim27-001 ENSMUSG00000021326 10090 + 13:21180213-21194724 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021761
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021761 5.836±3.60 20.547±14.35 6.276±0.30 5.519±3.64 7.323±1.16 9.712±5.01 1.296±0.78 4.943±1.89 5.368±3.51 5.088±1.87 1.880±0.62 16.151±14.97 11.179±6.02 27.093±12.92

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISO negative regulation of transcription from RNA polymerase II promoter
GO:0002820 ISS negative regulation of adaptive immune response
GO:0003677 IEA DNA binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 ISO nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005768 ISS endosome
GO:0006351 IEA transcription, DNA-templated
GO:0006469 ISS negative regulation of protein kinase activity
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0030904 ISS retromer complex
GO:0031965 ISO nuclear membrane
GO:0032720 ISS negative regulation of tumor necrosis factor production
GO:0032897 IDA negative regulation of viral transcription
GO:0034314 ISS Arp2/3 complex-mediated actin nucleation
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0045087 IDA innate immune response
GO:0045814 ISO negative regulation of gene expression, epigenetic
GO:0051091 IEA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0070206 IEA protein trimerization
GO:0070534 ISS protein K63-linked ubiquitination
GO:0072643 ISS interferon-gamma secretion
GO:0090281 ISS negative regulation of calcium ion import
GO:1900041 ISS negative regulation of interleukin-2 secretion
GO:1902187 IDA negative regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377194 TRIM27-002 protein_coding Homo_sapiens 0 1443
ENST00000377199 TRIM27-001 protein_coding Homo_sapiens 0 2294
ENST00000400720 TRIM27-001 protein_coding Homo_sapiens 0 2294
ENST00000412687 TRIM27-002 protein_coding Homo_sapiens 0 1443
ENST00000414543 TRIM27-003 protein_coding Homo_sapiens 0 1009
ENST00000417660 TRIM27-002 protein_coding Homo_sapiens 0 1443
ENST00000417993 TRIM27-003 protein_coding Homo_sapiens 0 1009
ENST00000427689 TRIM27-002 protein_coding Homo_sapiens 0 1448
ENST00000430208 TRIM27-003 protein_coding Homo_sapiens 0 1009
ENST00000430891 TRIM27-005 protein_coding Homo_sapiens 0 1057
ENST00000431123 TRIM27-001 protein_coding Homo_sapiens 0 2290
ENST00000435528 TRIM27-001 protein_coding Homo_sapiens 0 2300
ENST00000436621 TRIM27-002 protein_coding Homo_sapiens 0 1061
ENST00000437160 TRIM27-001 protein_coding Homo_sapiens 0 2294
ENST00000437383 TRIM27-003 protein_coding Homo_sapiens 0 1009
ENST00000437415 TRIM27-001 protein_coding Homo_sapiens 0 1061
ENST00000440169 TRIM27-003 protein_coding Homo_sapiens 0 420
ENST00000443804 TRIM27-001 protein_coding Homo_sapiens 0 1009
ENST00000445968 TRIM27-002 protein_coding Homo_sapiens 0 1007
ENST00000452265 TRIM27-002 protein_coding Homo_sapiens 0 1439
ENST00000453610 TRIM27-003 protein_coding Homo_sapiens 0 1009
ENST00000455861 TRIM27-004 protein_coding Homo_sapiens 0 1057
ENST00000459807 TRIM27-004 processed_transcript Homo_sapiens 0 1290
ENST00000464409 TRIM27-004 retained_intron Homo_sapiens 0 1061
ENST00000467742 TRIM27-006 processed_transcript Homo_sapiens 0 281
ENST00000468047 TRIM27-004 processed_transcript Homo_sapiens 0 1286
ENST00000468364 TRIM27-008 processed_transcript Homo_sapiens 0 281
ENST00000472315 TRIM27-006 processed_transcript Homo_sapiens 0 281
ENST00000478121 TRIM27-006 processed_transcript Homo_sapiens 0 281
ENST00000478495 TRIM27-007 retained_intron Homo_sapiens 0 1057
ENST00000481474 TRIM27-004 retained_intron Homo_sapiens 0 1290
ENST00000485666 TRIM27-004 processed_transcript Homo_sapiens 0 1295
ENST00000487609 TRIM27-006 processed_transcript Homo_sapiens 0 281
ENST00000493318 TRIM27-006 retained_intron Homo_sapiens 0 972
ENST00000494480 TRIM27-006 processed_transcript Homo_sapiens 0 281
ENST00000495323 TRIM27-004 processed_transcript Homo_sapiens 0 1290

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