C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger with KRAB and SCAN domains 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021327 Zkscan3 10090 - 13:21387013-21402755 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070785 Zkscan3-003 21387013-21402713 protein_coding
  ENSMUST00000116433 Zkscan3-002 21393232-21402716 protein_coding
  ENSMUST00000116434 Zkscan3-001 21387013-21402755 protein_coding
  ENSMUST00000117721 Zkscan3-004 21389293-21402695 protein_coding
  ENSMUST00000145631 Zkscan3-006 21388605-21394763 protein_coding
  ENSMUST00000151467 Zkscan3-005 21401549-21402670 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070785ENSMUST00000116433ENSMUST00000116434ENSMUST00000117721
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070785 3.495±0.28 6.396±0.00 7.867±1.87 6.438±2.76 N/A 5.742±0.00 N/A 3.392±0.61 7.284±1.09 3.256±0.10 2.993±0.50 6.675±2.51 3.833±0.87 1.607±0.25
ENSMUST00000116433 N/A 7.750±0.23 N/A N/A 3.514±0.00 N/A N/A N/A N/A N/A N/A 5.824±0.95 N/A N/A
ENSMUST00000116434 N/A N/A 6.548±0.00 N/A N/A N/A N/A N/A 2.879±1.21 N/A 1.521±0.00 N/A 2.163±0.94 1.202±0.00
ENSMUST00000117721 3.674±0.73 8.093±2.61 N/A 1.983±0.66 5.337±1.99 5.211±1.86 2.708±0.74 2.230±0.42 3.637±0.64 5.500±0.71 N/A 6.264±2.93 1.484±0.00 1.485±0.40

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 ISS DNA binding
GO:0003682 ISS chromatin binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006914 IEA autophagy
GO:0007040 ISS lysosome organization
GO:0010507 ISS negative regulation of autophagy
GO:0043565 ISS sequence-specific DNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:2000773 ISS negative regulation of cellular senescence

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000189298 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 protein_coding Homo_sapiens

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