C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger with KRAB and SCAN domains 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000189298 ZKSCAN3 9606 + 6:28349914-28369177 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000252211 ZKSCAN3-201 28349914-28369177 protein_coding
  ENST00000341464 ZKSCAN3-002 28349950-28366746 protein_coding
  ENST00000377255 ZKSCAN3-001 28349950-28369170 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252211ENST00000341464ENST00000377255
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252211 0.588±0.00 0.603±0.00 N/A 0.412±0.00 0.411±0.02 0.437±0.00 0.262±0.11 0.400±0.00 0.618±0.44 0.645±0.21 0.171±0.00 0.646±0.47 0.368±0.07 0.952±0.17
ENST00000341464 0.333±0.00 N/A N/A N/A 0.688±0.04 0.598±0.14 0.146±0.00 0.658±0.00 0.233±0.00 N/A N/A 0.512±0.29 0.488±0.13 0.601±0.13
ENST00000377255 N/A N/A 0.202±0.00 0.701±0.00 N/A N/A 0.125±0.00 N/A N/A 0.390±0.00 N/A 0.229±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006914 IEA autophagy
GO:0007040 IMP lysosome organization
GO:0010507 IMP negative regulation of autophagy
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:2000773 IMP negative regulation of cellular senescence

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000021327 Zkscan3 zinc finger with KRAB and SCAN domains 3 protein_coding Mus_musculus
ENSMUSG00000054931 Zkscan4 zinc finger with KRAB and SCAN domains 4 protein_coding Mus_musculus

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