C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho-related BTB domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022078 Rhobtb3-001 ENSMUSG00000021589 10090 - 13:75869537-75943867 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022078
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022078 2.518±1.37 0.623±0.08 3.461±0.16 5.588±3.28 1.789±0.26 0.741±0.17 2.302±0.40 0.675±0.17 0.962±0.50 1.380±0.22 2.552±1.08 2.674±0.95 0.700±0.56 1.556±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030F CIL_00030F_0002 CGP 13:75839868-75943925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 ISS ATP binding
GO:0005525 IEA GTP binding
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006200 IEA ATP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016887 ISS ATPase activity
GO:0017137 IEA Rab GTPase binding
GO:0042147 ISS retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379982 RHOBTB3-001 protein_coding Homo_sapiens 0 2512
ENST00000502541 RHOBTB3-016 nonsense_mediated_decay Homo_sapiens 0 433
ENST00000503737 RHOBTB3-011 protein_coding Homo_sapiens 0 442
ENST00000504179 RHOBTB3-017 protein_coding Homo_sapiens 0 922
ENST00000504949 RHOBTB3-005 retained_intron Homo_sapiens 0 1323
ENST00000506817 RHOBTB3-004 protein_coding Homo_sapiens 0 368
ENST00000506959 RHOBTB3-006 protein_coding Homo_sapiens 0 715
ENST00000510226 RHOBTB3-003 processed_transcript Homo_sapiens 0 375
ENST00000510313 RHOBTB3-009 protein_coding Homo_sapiens 0 604
ENST00000510623 RHOBTB3-014 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000511558 RHOBTB3-012 retained_intron Homo_sapiens 0 340
ENST00000512878 RHOBTB3-007 retained_intron Homo_sapiens 0 507
ENST00000515852 RHOBTB3-002 processed_transcript Homo_sapiens 0 228

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