C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger RNA binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022201 Zfr 10090 + 15:12117831-12185683 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000122941 Zfr-001 12117831-12185683 protein_coding
  ENSMUST00000124621 Zfr-004 12117866-12122337 processed_transcript
  ENSMUST00000128475 Zfr-005 12117851-12146216 protein_coding
  ENSMUST00000134277 Zfr-006 12117859-12138038 protein_coding
  ENSMUST00000140787 Zfr-003 12179632-12184463 processed_transcript
  ENSMUST00000147492 Zfr-009 12170276-12171786 retained_intron
  ENSMUST00000155054 Zfr-007 12159620-12166220 nonsense_mediated_decay
  ENSMUST00000156752 Zfr-008 12160541-12183993 protein_coding
  ENSMUST00000157034 Zfr-002 12166159-12184463 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000122941ENSMUST00000128475ENSMUST00000134277ENSMUST00000155054
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000122941 9.133±1.10 16.392±4.04 14.913±1.02 27.815±4.62 8.231±3.12 11.213±2.50 4.971±2.21 5.749±3.46 10.481±5.50 12.820±1.45 8.198±2.29 23.776±4.91 14.480±1.69 17.221±3.41
ENSMUST00000128475 24.842±2.98 53.034±2.78 N/A N/A 37.456±2.33 32.265±2.29 13.768±2.11 15.707±1.90 15.549±4.07 22.580±3.13 N/A 101.571±18.38 N/A 40.229±5.48
ENSMUST00000134277 N/A N/A N/A N/A N/A 11.561±2.71 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155054 N/A N/A N/A 78.894±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027109 zfr zinc finger RNA binding protein protein_coding Danio_rerio
ENSG00000056097 ZFR zinc finger RNA binding protein protein_coding Homo_sapiens

Loading