C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122941 Zfr-001 ENSMUSG00000022201 10090 + 15:12117831-12185683 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000122941
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000122941 9.133±1.10 16.392±4.04 14.913±1.02 27.815±4.62 8.231±3.12 11.213±2.50 4.971±2.21 5.749±3.46 10.481±5.50 12.820±1.45 8.198±2.29 23.776±4.91 14.480±1.69 17.221±3.41

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129415 zfr-201 protein_coding Danio_rerio 0 736
ENSDART00000074789 zfr-001 protein_coding Danio_rerio 0 736
ENST00000265069 ZFR-001 protein_coding Homo_sapiens 0 5984
ENST00000502988 ZFR-007 retained_intron Homo_sapiens 0 1555
ENST00000505204 ZFR-008 retained_intron Homo_sapiens 0 656
ENST00000505366 ZFR-002 retained_intron Homo_sapiens 0 1788
ENST00000507465 ZFR-004 nonsense_mediated_decay Homo_sapiens 0 774
ENST00000510369 ZFR-005 processed_transcript Homo_sapiens 0 1712
ENST00000514356 ZFR-006 retained_intron Homo_sapiens 0 1851
ENST00000616882 ZFR-201 protein_coding Homo_sapiens 0 966

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