C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger RNA binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000056097 ZFR 9606 - 5:32354350-32444761 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265069 ZFR-001 32354350-32444761 protein_coding
  ENST00000502988 ZFR-007 32354629-32364938 retained_intron
  ENST00000505204 ZFR-008 32419820-32444496 retained_intron
  ENST00000505366 ZFR-002 32406727-32444738 retained_intron
  ENST00000507465 ZFR-004 32355648-32390317 nonsense_mediated_decay
  ENST00000510369 ZFR-005 32354852-32383819 processed_transcript
  ENST00000514356 ZFR-006 32354351-32380424 retained_intron
  ENST00000616882 ZFR-201 32406877-32444738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265069ENST00000507465
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265069 13.459±0.00 13.703±0.00 5.306±0.00 15.816±10.80 13.592±2.99 12.900±8.18 8.322±5.83 11.769±7.82 8.183±2.83 9.639±0.00 7.467±5.46 13.109±5.39 10.626±0.78 10.140±5.78
ENST00000507465 8.523±0.00 N/A N/A 29.433±0.00 N/A N/A N/A 3.750±0.00 N/A N/A 4.614±0.00 13.521±7.39 15.004±0.00 18.789±3.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SV CIL_0002SV_0002 CGP 5:32226994-32444761
CIL_0002SE CIL_0002SE_0002 CGP 5:32354350-32604079

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027109 zfr zinc finger RNA binding protein protein_coding Danio_rerio
ENSMUSG00000022201 Zfr zinc finger RNA binding protein protein_coding Mus_musculus

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