C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: plectin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022565 Plec 10090 - 15:76170974-76232574 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023226 Plec-004 76170976-76195710 protein_coding
  ENSMUST00000054449 Plec-201 76170974-76199835 protein_coding
  ENSMUST00000071869 Plec-202 76170974-76209165 protein_coding
  ENSMUST00000072692 Plec-003 76170976-76198209 protein_coding
  ENSMUST00000073418 Plec-203 76170974-76206321 protein_coding
  ENSMUST00000074834 Plec-001 76170975-76229497 protein_coding
  ENSMUST00000076442 Plec-002 76170976-76206322 protein_coding
  ENSMUST00000080857 Plec-204 76170974-76208253 protein_coding
  ENSMUST00000089610 Plec-205 76170974-76231378 protein_coding
  ENSMUST00000165135 Plec-017 76230735-76232574 retained_intron
  ENSMUST00000165210 Plec-015 76175380-76188043 protein_coding
  ENSMUST00000165453 Plec-014 76188464-76199835 protein_coding
  ENSMUST00000166428 Plec-008 76188541-76232570 protein_coding
  ENSMUST00000167754 Plec-007 76188464-76232045 protein_coding
  ENSMUST00000169108 Plec-013 76170976-76200607 protein_coding
  ENSMUST00000169289 Plec-010 76188464-76208253 protein_coding
  ENSMUST00000169438 Plec-006 76170976-76199406 protein_coding
  ENSMUST00000169714 Plec-005 76170976-76199835 protein_coding
  ENSMUST00000170728 Plec-012 76194393-76200607 protein_coding
  ENSMUST00000170915 Plec-009 76194393-76209165 protein_coding
  ENSMUST00000171562 Plec-016 76170976-76208653 protein_coding
  ENSMUST00000171634 Plec-011 76186611-76206321 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023226ENSMUST00000054449ENSMUST00000071869ENSMUST00000072692ENSMUST00000074834ENSMUST00000076442ENSMUST00000165210ENSMUST00000169108ENSMUST00000169438
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023226 4.935±0.69 6.520±0.00 1.373±0.00 12.349±0.00 21.079±5.16 N/A 2.346±0.23 N/A 13.112±0.84 N/A 11.754±2.26 8.250±3.47 N/A
ENSMUST00000054449 N/A N/A N/A 9.359±0.00 N/A 6.009±1.98 N/A N/A N/A 9.783±2.87 N/A N/A N/A
ENSMUST00000071869 N/A N/A 2.610±1.64 N/A N/A N/A N/A 0.976±0.26 N/A N/A N/A N/A N/A
ENSMUST00000072692 N/A N/A N/A N/A N/A N/A N/A N/A 10.698±2.37 N/A N/A N/A N/A
ENSMUST00000074834 9.747±0.00 16.484±4.25 1.672±0.00 N/A N/A 9.386±1.86 3.652±0.32 2.101±0.90 N/A N/A 13.490±2.08 17.277±9.83 28.510±9.89
ENSMUST00000076442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.154±0.00 N/A N/A
ENSMUST00000165210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.257±0.00
ENSMUST00000169108 N/A N/A N/A N/A N/A 10.206±1.47 N/A N/A N/A 14.779±4.35 23.503±0.00 9.947±3.99 7.690±0.00
ENSMUST00000169438 N/A N/A N/A N/A N/A N/A N/A 0.600±0.00 N/A N/A 20.317±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_0002GS CIL_0002GS_0002 CGP 15:76170974-76243441

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0008307 IEA structural constituent of muscle
GO:0030056 ISS hemidesmosome
GO:0030506 IEA ankyrin binding
GO:0031581 ISS hemidesmosome assembly
GO:0042383 ISS sarcolemma
GO:0043292 IDA contractile fiber
GO:0044822 IEA poly(A) RNA binding
GO:0045111 IEA intermediate filament cytoskeleton
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021987 plecb plectin b protein_coding Danio_rerio
ENSDARG00000062590 pleca plectin a protein_coding Danio_rerio
ENSG00000178209 PLEC plectin protein_coding Homo_sapiens

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