C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: queuine tRNA-ribosyltransferase domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022704 Qtrtd1 10090 - 16:43861407-43926809 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023387 Qtrtd1-001 43861407-43889685 protein_coding
  ENSMUST00000124674 Qtrtd1-005 43880299-43889656 retained_intron
  ENSMUST00000131360 Qtrtd1-003 43868946-43889656 retained_intron
  ENSMUST00000134792 Qtrtd1-006 43876783-43889655 nonsense_mediated_decay
  ENSMUST00000143858 Qtrtd1-008 43862784-43867555 retained_intron
  ENSMUST00000144626 Qtrtd1-009 43867507-43869395 retained_intron
  ENSMUST00000146343 Qtrtd1-004 43863030-43926809 retained_intron
  ENSMUST00000151963 Qtrtd1-007 43871673-43876964 retained_intron
  ENSMUST00000156568 Qtrtd1-002 43861407-43889648 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023387ENSMUST00000143858ENSMUST00000144626ENSMUST00000151963ENSMUST00000156568
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023387 N/A 1.889±1.06 N/A 1.738±1.25 N/A 1.027±0.00 N/A 2.066±0.00 1.221±0.25 1.965±0.00 N/A 4.162±0.16 2.419±0.00 3.073±0.00
ENSMUST00000143858 N/A N/A N/A 4.278±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 5.921±0.00 N/A
ENSMUST00000144626 N/A 4.706±0.42 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.307±0.00 N/A N/A
ENSMUST00000156568 1.687±0.95 1.041±0.27 1.704±0.51 1.540±0.07 1.514±0.28 1.016±0.19 0.784±0.19 0.922±0.26 0.976±0.34 1.291±0.41 0.776±0.23 2.020±0.70 0.848±0.34 0.616±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CD CIL_0003CD_0002 CGP 16:43762221-43926809
CIL_0003CE CIL_0003CE_0002 CGP 16:43861407-43964314

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IEA mitochondrion
GO:0008270 IEA zinc ion binding
GO:0008479 IEA queuine tRNA-ribosyltransferase activity
GO:0008616 IEA queuosine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016093 qtrtd1 queuine tRNA-ribosyltransferase domain containing 1 protein_coding Danio_rerio
ENSG00000151576 QTRTD1 queuine tRNA-ribosyltransferase domain containing 1 protein_coding Homo_sapiens

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