C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: claudin 25
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022744 Cldn25 10090 + 16:58727910-58734251 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023426 Cldn25-001 58727910-58734251 protein_coding
  ENSMUST00000159829 Cldn25-006 58728039-58732908 processed_transcript
  ENSMUST00000159944 Cldn25-003 58728023-58732989 nonsense_mediated_decay
  ENSMUST00000162057 Cldn25-002 58727925-58733608 protein_coding
  ENSMUST00000162191 Cldn25-005 58728048-58731379 protein_coding
  ENSMUST00000162249 Cldn25-004 58732264-58732980 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023426ENSMUST00000159944ENSMUST00000162057
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023426 15.254±5.71 9.207±1.77 28.890±4.78 18.165±9.38 11.388±1.67 10.379±3.13 12.289±1.97 11.901±1.30 10.502±3.41 14.161±1.56 15.556±1.44 12.544±3.58 12.744±5.97 12.087±2.19
ENSMUST00000159944 10.076±0.00 25.307±3.17 N/A N/A 10.467±3.78 22.272±6.73 10.532±1.22 9.964±0.86 9.166±1.43 11.656±1.08 N/A 21.075±7.95 N/A 8.933±0.00
ENSMUST00000162057 9.426±4.29 4.926±1.91 N/A 8.620±3.41 6.836±1.49 8.457±1.09 5.593±0.61 4.064±0.66 2.010±0.22 7.468±0.96 2.479±0.00 16.559±6.36 3.799±0.81 4.905±2.29

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0009986 IEA cell surface
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046085 CLDND1 (1 of 2) claudin domain containing 1 protein_coding Danio_rerio
ENSDARG00000052386 CLDND1 (2 of 2) claudin domain containing 1 protein_coding Danio_rerio
ENSG00000080822 CLDND1 claudin domain containing 1 protein_coding Homo_sapiens

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