C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: claudin domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000080822 CLDND1 9606 - 3:98497912-98523066 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341181 CLDND1-001 98515473-98523043 protein_coding
  ENST00000394180 CLDND1-004 98515480-98523066 protein_coding
  ENST00000394181 CLDND1-002 98515483-98523018 protein_coding
  ENST00000394185 CLDND1-005 98515483-98522985 protein_coding
  ENST00000502288 CLDND1-008 98497912-98522887 protein_coding
  ENST00000502299 CLDND1-013 98516703-98522931 protein_coding
  ENST00000502980 CLDND1-015 98520719-98522902 retained_intron
  ENST00000503004 CLDND1-006 98515483-98522514 protein_coding
  ENST00000503621 CLDND1-016 98517112-98522902 protein_coding
  ENST00000503799 CLDND1-030 98517139-98522875 nonsense_mediated_decay
  ENST00000506575 CLDND1-026 98521156-98522602 protein_coding
  ENST00000506885 CLDND1-032 98515483-98521283 protein_coding
  ENST00000506927 CLDND1-029 98516654-98517345 retained_intron
  ENST00000507411 CLDND1-028 98516823-98522875 retained_intron
  ENST00000507874 CLDND1-007 98500840-98522922 protein_coding
  ENST00000507944 CLDND1-019 98517062-98522851 protein_coding
  ENST00000508071 CLDND1-022 98517158-98522846 protein_coding
  ENST00000508503 CLDND1-012 98516777-98522955 processed_transcript
  ENST00000508659 CLDND1-011 98517076-98522955 protein_coding
  ENST00000508902 CLDND1-009 98516711-98523041 protein_coding
  ENST00000510541 CLDND1-017 98516774-98522902 protein_coding
  ENST00000510545 CLDND1-003 98515487-98522959 protein_coding
  ENST00000511081 CLDND1-014 98516544-98522905 protein_coding
  ENST00000511667 CLDND1-010 98516685-98522964 protein_coding
  ENST00000512147 CLDND1-018 98516711-98522899 protein_coding
  ENST00000513287 CLDND1-023 98516653-98522754 protein_coding
  ENST00000513452 CLDND1-025 98516687-98522605 protein_coding
  ENST00000513873 CLDND1-031 98515484-98517160 protein_coding
  ENST00000513988 CLDND1-027 98518735-98522875 retained_intron
  ENST00000514537 CLDND1-020 98516782-98522846 protein_coding
  ENST00000515620 CLDND1-024 98517052-98522606 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341181ENST00000394180ENST00000394181ENST00000502980ENST00000503004ENST00000507874ENST00000508902ENST00000513452
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341181 14.602±0.00 10.854±0.00 N/A 83.196±23.22 14.229±0.37 20.146±14.62 8.929±3.89 10.213±3.51 13.007±6.91 21.805±13.51 3.602±2.88 14.472±5.00 12.555±2.72 33.275±12.05
ENST00000394180 N/A N/A N/A 66.461±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394181 N/A N/A N/A 126.006±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 5.270±0.00 N/A
ENST00000502980 N/A N/A N/A N/A N/A 7.660±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503004 N/A N/A 2.776±0.00 49.419±0.00 6.716±0.00 N/A 1.563±0.00 N/A 5.770±0.00 7.802±0.00 0.592±0.00 7.354±0.00 N/A 6.379±0.00
ENST00000507874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.527±1.97 N/A N/A N/A
ENST00000508902 14.328±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.004±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003B3 CIL_0003B3_0001 CGP 3:98469480-98498663

Gene Ontology
GO IDEvidence TypeGO Description
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016324 IEA apical plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046085 CLDND1 (1 of 2) claudin domain containing 1 protein_coding Danio_rerio
ENSDARG00000052386 CLDND1 (2 of 2) claudin domain containing 1 protein_coding Danio_rerio
ENSMUSG00000022744 Cldn25 claudin 25 protein_coding Mus_musculus

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