C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromatin assembly factor 1, subunit B (p60)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022945 Chaf1b 10090 + 16:93883901-93906115 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023666 Chaf1b-001 93883901-93906115 protein_coding
  ENSMUST00000117099 Chaf1b-003 93883924-93906077 protein_coding
  ENSMUST00000120586 Chaf1b-005 93884202-93887152 protein_coding
  ENSMUST00000124313 Chaf1b-002 93883931-93894288 retained_intron
  ENSMUST00000128316 Chaf1b-007 93904693-93906110 retained_intron
  ENSMUST00000142316 Chaf1b-004 93884016-93885471 protein_coding
  ENSMUST00000143006 Chaf1b-006 93892741-93900129 retained_intron
  ENSMUST00000152980 Chaf1b-008 93886710-93892789 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023666ENSMUST00000117099ENSMUST00000120586ENSMUST00000124313ENSMUST00000128316ENSMUST00000142316ENSMUST00000143006
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023666 1.686±1.57 0.804±0.29 1.190±0.27 4.266±2.97 1.041±0.34 3.327±0.25 0.275±0.00 0.602±0.35 9.751±10.30 0.727±0.33 0.009±0.00 3.832±1.19 10.444±6.31 4.229±1.07
ENSMUST00000117099 3.488±0.00 0.491±0.33 N/A 0.991±0.00 0.396±0.16 N/A 0.079±0.05 0.573±0.00 0.478±0.00 N/A 0.107±0.11 2.746±0.00 4.527±3.44 5.142±0.00
ENSMUST00000120586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.412±0.00 N/A N/A N/A
ENSMUST00000124313 0.055±0.00 N/A N/A N/A N/A N/A 0.049±0.02 N/A 0.090±0.00 N/A 0.018±0.00 N/A 0.088±0.00 N/A
ENSMUST00000128316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A N/A
ENSMUST00000142316 N/A N/A N/A N/A N/A N/A 0.079±0.00 N/A N/A N/A 0.139±0.02 N/A N/A N/A
ENSMUST00000143006 N/A N/A N/A N/A N/A N/A 0.217±0.00 N/A N/A N/A 0.100±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Z5 CIL_0006Z5_0002 CGP 16:93832121-93906115
CIL_0006Z6 CIL_0006Z6_0002 CGP 16:93883901-94008837

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005829 IEA cytosol
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006335 IEA DNA replication-dependent nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0031497 ISS chromatin assembly
GO:0033186 ISS CAF-1 complex
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056473 chaf1b chromatin assembly factor 1, subunit B protein_coding Danio_rerio
ENSG00000159259 CHAF1B chromatin assembly factor 1, subunit B (p60) protein_coding Homo_sapiens

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