C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromatin assembly factor 1, subunit B (p60)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117099 Chaf1b-003 ENSMUSG00000022945 10090 + 16:93883924-93906077 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000117099
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000117099 3.488±0.00 0.491±0.33 0.991±0.00 0.396±0.16 0.079±0.05 0.573±0.00 0.478±0.00 0.107±0.11 2.746±0.00 4.527±3.44 5.142±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Z5 CIL_0006Z5_0002 CGP 16:93832121-93906115
CIL_0006Z6 CIL_0006Z6_0002 CGP 16:93883901-94008837

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0031497 ISS chromatin assembly
GO:0033186 ISS CAF-1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314103 CHAF1B-001 protein_coding Homo_sapiens 0 1395
ENST00000404930 RP3-359N14.1-001 processed_pseudogene Homo_sapiens 0 1027
ENST00000480486 CHAF1B-003 processed_transcript Homo_sapiens 0 693
ENST00000481458 CHAF1B-002 processed_transcript Homo_sapiens 0 193

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