C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromatin assembly factor 1, subunit B (p60)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023666 Chaf1b-001 ENSMUSG00000022945 10090 + 16:93883901-93906115 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023666
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023666 1.686±1.57 0.804±0.29 1.190±0.27 4.266±2.97 1.041±0.34 3.327±0.25 0.275±0.00 0.602±0.35 9.751±10.30 0.727±0.33 0.009±0.00 3.832±1.19 10.444±6.31 4.229±1.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Z5 CIL_0006Z5_0002 CGP 16:93832121-93906115
CIL_0006Z6 CIL_0006Z6_0002 CGP 16:93883901-94008837

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005829 IEA cytosol
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006335 IEA DNA replication-dependent nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0031497 ISS chromatin assembly
GO:0033186 ISS CAF-1 complex
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314103 CHAF1B-001 protein_coding Homo_sapiens 0 1395
ENST00000404930 RP3-359N14.1-001 processed_pseudogene Homo_sapiens 0 1027
ENST00000480486 CHAF1B-003 processed_transcript Homo_sapiens 0 693
ENST00000481458 CHAF1B-002 processed_transcript Homo_sapiens 0 193

Loading