C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1110004E09 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022972 1110004E09Rik 10090 - 16:90925809-90934927 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023694 1110004E09Rik-001 90925809-90934827 protein_coding
  ENSMUST00000125519 1110004E09Rik-006 90925970-90934927 nonsense_mediated_decay
  ENSMUST00000129345 1110004E09Rik-004 90925953-90929983 protein_coding
  ENSMUST00000131583 1110004E09Rik-002 90927380-90934826 processed_transcript
  ENSMUST00000142340 1110004E09Rik-003 90927182-90934506 protein_coding
  ENSMUST00000149833 1110004E09Rik-005 90927119-90934723 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023694ENSMUST00000125519ENSMUST00000129345ENSMUST00000131583ENSMUST00000142340ENSMUST00000149833
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023694 2.924±0.47 7.190±0.45 12.903±0.73 18.113±7.33 1.351±0.82 1.339±0.22 3.767±0.57 5.389±1.19 7.055±5.77 2.868±0.65 14.714±0.86 8.604±7.17 11.317±5.60 31.939±5.15
ENSMUST00000125519 3.396±0.67 7.415±1.45 N/A 7.742±5.20 5.654±2.36 8.085±2.50 1.959±0.73 2.751±0.73 1.867±0.98 10.720±3.29 N/A 14.559±3.14 N/A 65.374±79.44
ENSMUST00000129345 N/A N/A N/A N/A 2.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131583 3.087±0.20 27.925±14.42 N/A N/A 4.900±0.64 6.987±2.67 N/A 4.030±0.31 4.174±0.94 N/A N/A 9.498±0.84 N/A N/A
ENSMUST00000142340 N/A N/A N/A 25.239±0.00 N/A N/A N/A N/A N/A N/A N/A 25.750±0.00 16.539±8.70 140.711±233.34
ENSMUST00000149833 N/A N/A N/A 26.599±0.00 N/A N/A N/A N/A N/A N/A N/A 15.319±8.34 7.507±2.88 343.264±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0002 VISTA 16:90804484-91407069
CIL_00087M CIL_00087M_0002 VISTA 16:90839145-91442270
CIL_0009BQ CIL_0009BQ_0002 VISTA 16:90840152-91441411

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035332 C10H21orf59 chromosome 21 open reading frame 59 protein_coding Danio_rerio
ENSG00000265590 AP000275.65 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000446874} protein_coding Homo_sapiens

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