C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 4, member n
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023349 Clec4n 10090 + 6:123229843-123247021 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000024118 Clec4n-001 123229854-123247019 protein_coding
  ENSMUST00000112554 Clec4n-004 123229843-123247021 protein_coding
  ENSMUST00000117130 Clec4n-002 123229857-123247019 protein_coding
  ENSMUST00000144840 Clec4n-006 123229857-123230829 processed_transcript
  ENSMUST00000151714 Clec4n-003 123229857-123247019 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024118ENSMUST00000112554ENSMUST00000117130ENSMUST00000144840
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024118 0.460±0.19 0.470±0.22 1.525±0.27 0.266±0.00 2.365±0.83 1.084±0.23 0.268±0.09 0.173±0.10 3.589±2.67 4.945±0.80 0.477±0.00 1.048±0.55 0.406±0.35 0.182±0.06
ENSMUST00000112554 0.136±0.09 0.049±0.00 0.429±0.07 0.035±0.00 0.526±0.07 0.583±0.18 0.198±0.00 0.181±0.07 1.314±0.73 1.769±0.59 0.245±0.22 0.279±0.15 0.094±0.01 0.009±0.00
ENSMUST00000117130 N/A 0.166±0.00 N/A N/A N/A 0.836±0.00 0.265±0.00 0.197±0.00 0.163±0.00 N/A N/A 0.419±0.17 N/A 0.006±0.00
ENSMUST00000144840 0.550±0.14 N/A N/A N/A N/A 0.976±0.00 0.329±0.05 0.340±0.20 0.955±0.55 N/A 0.159±0.00 0.836±0.30 0.498±0.41 0.118±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XR CIL_0003XR_000K CGP 6:123172893-123247021
CIL_0003XR CIL_0003XR_000D CGP 6:123229843-123275268

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0016021 IEA integral component of membrane
GO:0030246 IDA carbohydrate binding
GO:0043123 IDA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 IDA innate immune response
GO:0050715 IDA positive regulation of cytokine secretion
GO:0050832 IDA defense response to fungus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008075 illr4 immune-related, lectin-like receptor 4 protein_coding Danio_rerio
ENSDARG00000008182 si:ch73-111e15.1 si:ch73-111e15.1 protein_coding Danio_rerio
ENSDARG00000018327 illr3 immune-related, lectin-like receptor 3 protein_coding Danio_rerio
ENSDARG00000025150 si:dkey-181c13.1 si:dkey-181c13.1 protein_coding Danio_rerio
ENSDARG00000026805 CR847844.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000029461 cd209 CD209 molecule protein_coding Danio_rerio
ENSDARG00000043894 si:ch211-214k5.3 si:ch211-214k5.3 protein_coding Danio_rerio
ENSDARG00000056379 si:ch211-154o6.6 si:ch211-154o6.6 protein_coding Danio_rerio
ENSDARG00000057090 CR847844.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000059254 illr1 immune-related, lectin-like receptor 1 protein_coding Danio_rerio
ENSDARG00000069323 si:ch73-122g19.1 si:ch73-122g19.1 protein_coding Danio_rerio
ENSDARG00000087245 CR847844.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088219 CR847844.4 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088614 BX936386.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088727 CR847844.6 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000089377 si:ch211-232p21.6 si:ch211-232p21.6 protein_coding Danio_rerio
ENSDARG00000092749 si:ch211-133n4.12 si:ch211-133n4.12 protein_coding Danio_rerio
ENSDARG00000094796 si:ch211-133n4.11 si:ch211-133n4.11 protein_coding Danio_rerio
ENSDARG00000094882 illr2 immune-related, lectin-like receptor 2 protein_coding Danio_rerio
ENSDARG00000095424 si:ch211-133n4.7 si:ch211-133n4.7 protein_coding Danio_rerio
ENSDARG00000096624 si:dkey-187i8.2 si:dkey-187i8.2 protein_coding Danio_rerio
ENSG00000205846 CLEC6A C-type lectin domain family 6, member A protein_coding Homo_sapiens

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