C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(rC) binding protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023495 Pcbp4 10090 + 9:106453291-106464012 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000024260 Pcbp4-001 106453890-106464012 protein_coding
  ENSMUST00000185507 Pcbp4-010 106461056-106463549 nonsense_mediated_decay
  ENSMUST00000185779 Pcbp4-005 106453933-106461924 protein_coding
  ENSMUST00000185831 Pcbp4-007 106455684-106456439 processed_transcript
  ENSMUST00000185854 Pcbp4-004 106453407-106460075 processed_transcript
  ENSMUST00000185874 Pcbp4-003 106453291-106461094 protein_coding
  ENSMUST00000185996 Pcbp4-009 106461743-106462411 processed_transcript
  ENSMUST00000186519 Pcbp4-014 106453920-106460520 retained_intron
  ENSMUST00000187975 Pcbp4-006 106453845-106454836 processed_transcript
  ENSMUST00000188396 Pcbp4-016 106461870-106463695 protein_coding
  ENSMUST00000188448 Pcbp4-012 106462053-106462670 retained_intron
  ENSMUST00000189099 Pcbp4-002 106460660-106461337 protein_coding
  ENSMUST00000189882 Pcbp4-015 106461273-106462161 retained_intron
  ENSMUST00000190428 Pcbp4-013 106461298-106462944 protein_coding
  ENSMUST00000190430 Pcbp4-008 106456097-106461078 protein_coding
  ENSMUST00000190799 Pcbp4-011 106460395-106460868 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024260ENSMUST00000188396ENSMUST00000188448ENSMUST00000190428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024260 27.299±5.29 9.788±2.54 16.429±2.16 116.630±67.10 23.352±3.57 10.180±1.52 26.324±3.84 28.051±4.51 10.146±3.22 17.787±3.05 21.343±4.59 20.468±8.99 8.810±4.58 19.636±0.81
ENSMUST00000188396 N/A 7.359±0.41 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.907±0.00 N/A
ENSMUST00000188448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.977±0.00 6.286±2.11 N/A
ENSMUST00000190428 N/A N/A N/A N/A 11.991±0.00 N/A N/A N/A N/A N/A N/A 6.044±1.47 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NT CIL_0008NT_0002 VISTA 9:106082995-106685663
CIL_00087C CIL_00087C_0002 VISTA 9:106116951-106718793

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005737 IEA cytoplasm
GO:0030529 IEA ribonucleoprotein complex
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024276 PCBP4 poly(rC) binding protein 4 protein_coding Danio_rerio
ENSG00000090097 PCBP4 poly(rC) binding protein 4 protein_coding Homo_sapiens
ENSG00000272762 RP11-155D18.12 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000420008} protein_coding Homo_sapiens

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