C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(rC) binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024260 Pcbp4-001 ENSMUSG00000023495 10090 + 9:106453890-106464012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024260
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024260 27.299±5.29 9.788±2.54 16.429±2.16 116.630±67.10 23.352±3.57 10.180±1.52 26.324±3.84 28.051±4.51 10.146±3.22 17.787±3.05 21.343±4.59 20.468±8.99 8.810±4.58 19.636±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NT CIL_0008NT_0002 VISTA 9:106082995-106685663
CIL_00087C CIL_00087C_0002 VISTA 9:106116951-106718793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005737 IEA cytoplasm
GO:0030529 IEA ribonucleoprotein complex
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322099 PCBP4-201 protein_coding Homo_sapiens 0 2170
ENST00000322241 GPR62-001 protein_coding Homo_sapiens 0.000000000000001 90
ENST00000355852 PCBP4-001 protein_coding Homo_sapiens 0 2307
ENST00000395014 PCBP4-202 protein_coding Homo_sapiens 0 1629
ENST00000428823 PCBP4-203 protein_coding Homo_sapiens 0 1435
ENST00000461544 PCBP4-010 protein_coding Homo_sapiens 0 231
ENST00000461554 PCBP4-002 protein_coding Homo_sapiens 0 2169
ENST00000466412 PCBP4-014 protein_coding Homo_sapiens 0 551
ENST00000468324 PCBP4-016 protein_coding Homo_sapiens 0 756
ENST00000471308 PCBP4-005 nonsense_mediated_decay Homo_sapiens 0 1273
ENST00000471358 PCBP4-011 retained_intron Homo_sapiens 0 351
ENST00000471622 PCBP4-007 protein_coding Homo_sapiens 0 1321
ENST00000483411 PCBP4-012 protein_coding Homo_sapiens 0 335
ENST00000484633 PCBP4-003 protein_coding Homo_sapiens 0 1434
ENST00000489595 RP11-155D18.12-002 protein_coding Homo_sapiens 0 412
ENST00000490063 PCBP4-013 protein_coding Homo_sapiens 0 481
ENST00000492809 PCBP4-008 retained_intron Homo_sapiens 0 1598
ENST00000497390 PCBP4-009 retained_intron Homo_sapiens 0 1943
ENST00000497653 PCBP4-015 protein_coding Homo_sapiens 0 579
ENST00000498822 PCBP4-004 retained_intron Homo_sapiens 0 1940

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