C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(rC) binding protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000090097 PCBP4 9606 - 3:51957454-51968410 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322099 PCBP4-201 51957456-51962892 protein_coding
  ENST00000355852 PCBP4-001 51957454-51967457 protein_coding
  ENST00000395014 PCBP4-202 51958137-51962892 protein_coding
  ENST00000428823 PCBP4-203 51957456-51962892 protein_coding
  ENST00000461544 PCBP4-010 51960866-51967454 protein_coding
  ENST00000461554 PCBP4-002 51957458-51967445 protein_coding
  ENST00000466412 PCBP4-014 51960202-51968184 protein_coding
  ENST00000468324 PCBP4-016 51959906-51968403 protein_coding
  ENST00000471308 PCBP4-005 51957459-51967448 nonsense_mediated_decay
  ENST00000471358 PCBP4-011 51960629-51967445 retained_intron
  ENST00000471622 PCBP4-007 51957495-51962079 protein_coding
  ENST00000483411 PCBP4-012 51960557-51967454 protein_coding
  ENST00000484633 PCBP4-003 51957458-51968410 protein_coding
  ENST00000490063 PCBP4-013 51960522-51968387 protein_coding
  ENST00000492809 PCBP4-008 51957458-51961636 retained_intron
  ENST00000497390 PCBP4-009 51957458-51961636 retained_intron
  ENST00000497653 PCBP4-015 51960256-51968409 protein_coding
  ENST00000498822 PCBP4-004 51957460-51963256 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000322099ENST00000355852ENST00000395014ENST00000428823ENST00000461554
Transcript ID Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000322099 N/A N/A N/A N/A N/A N/A N/A 10.576±0.00 N/A
ENST00000355852 18.391±11.36 2.709±0.00 12.869±0.00 9.501±5.44 20.436±0.00 25.388±20.42 17.039±16.17 N/A 10.700±3.80
ENST00000395014 37.887±0.00 N/A N/A 14.986±0.00 N/A 24.792±15.42 N/A N/A 14.079±0.00
ENST00000428823 N/A N/A N/A N/A N/A N/A 20.328±0.00 N/A 7.761±0.00
ENST00000461554 N/A N/A N/A N/A N/A 4.314±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087C CIL_00087C_0001 VISTA 3:51705330-52307529
CIL_0008NT CIL_0008NT_0001 VISTA 3:51738719-52342071

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA:NAS RNA binding
GO:0005737 IEA cytoplasm
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024276 PCBP4 poly(rC) binding protein 4 protein_coding Danio_rerio
ENSMUSG00000023495 Pcbp4 poly(rC) binding protein 4 protein_coding Mus_musculus

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