C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: peripherin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023978 Prph2 10090 + 17:46910459-46924933 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000024773 Prph2-001 46910459-46924933 protein_coding
  ENSMUST00000162469 Prph2-002 46910478-46920347 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverOvaryPlacentaTestisENSMUST00000024773ENSMUST00000162469
Transcript ID Bladder Brain Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000024773 0.006±0.00 0.009±0.00 0.011±0.00 0.022±0.01 0.018±0.02 0.076±0.02 0.004±0.00 0.866±0.38
ENSMUST00000162469 N/A N/A N/A N/A N/A 0.094±0.00 0.004±0.00 0.496±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UG CIL_0006UG_0002 CGP 17:46910459-47010532

Gene Ontology
GO IDEvidence TypeGO Description
GO:0007155 IEA cell adhesion
GO:0007601 IEA visual perception
GO:0009645 IEA response to low light intensity stimulus
GO:0016021 IEA integral component of membrane
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014840 prph2b peripherin 2b (retinal degeneration, slow) protein_coding Danio_rerio
ENSDARG00000038018 prph2a peripherin 2a (retinal degeneration, slow) protein_coding Danio_rerio
ENSG00000112619 PRPH2 peripherin 2 (retinal degeneration, slow) protein_coding Homo_sapiens

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