C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: copine V
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024008 Cpne5 10090 - 17:29156550-29237797 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000024805 Cpne5-001 29156550-29237797 protein_coding
  ENSMUST00000124917 Cpne5-005 29169437-29176683 processed_transcript
  ENSMUST00000126755 Cpne5-002 29217862-29237712 retained_intron
  ENSMUST00000126993 Cpne5-004 29157916-29184103 processed_transcript
  ENSMUST00000137727 Cpne5-003 29188334-29237759 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024805ENSMUST00000124917ENSMUST00000126755ENSMUST00000126993ENSMUST00000137727
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024805 N/A 0.142±0.09 N/A 1.885±1.32 N/A 0.065±0.01 0.275±0.02 N/A 0.012±0.00 0.417±0.00 N/A 0.508±0.05 0.229±0.13 0.390±0.00
ENSMUST00000124917 N/A N/A N/A N/A N/A N/A N/A N/A 0.219±0.00 N/A N/A N/A N/A N/A
ENSMUST00000126755 0.046±0.00 0.070±0.03 0.154±0.02 N/A 0.100±0.02 0.078±0.02 N/A 0.090±0.01 0.035±0.01 N/A 0.056±0.03 0.102±0.03 0.204±0.13 0.145±0.00
ENSMUST00000126993 1.633±1.54 0.496±0.16 0.316±0.05 9.245±7.95 0.497±0.19 0.420±0.04 1.410±0.66 0.252±0.13 0.091±0.03 2.760±1.14 0.070±0.00 2.326±1.35 0.876±0.75 7.388±3.05
ENSMUST00000137727 N/A N/A N/A 34.515±0.00 N/A N/A 2.736±0.59 N/A N/A N/A N/A 0.448±0.00 0.998±0.00 2.419±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089L CIL_00089L_0002 VISTA 17:29133661-29735358
CIL_0002YC CIL_0002YC_0002 CGP 17:29135056-29237797
CIL_0002Y7 CIL_0002Y7_0002 CGP 17:29156550-29264158

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0043005 IDA neuron projection
GO:0043025 IDA neuronal cell body
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061466 CPNE5 (1 of 2) copine V protein_coding Danio_rerio
ENSDARG00000070919 cpne5 copine V protein_coding Danio_rerio
ENSG00000124772 CPNE5 copine V protein_coding Homo_sapiens

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