C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lipin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024052 Lpin2 10090 + 17:71182560-71249817 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053173 Lpin2-014 71240707-71243483 retained_intron
  ENSMUST00000125665 Lpin2-013 71246031-71247315 retained_intron
  ENSMUST00000126681 Lpin2-005 71204676-71248242 protein_coding
  ENSMUST00000129635 Lpin2-001 71183978-71249817 protein_coding
  ENSMUST00000130750 Lpin2-008 71231433-71238085 retained_intron
  ENSMUST00000133156 Lpin2-011 71240606-71244830 retained_intron
  ENSMUST00000135589 Lpin2-003 71204654-71231505 nonsense_mediated_decay
  ENSMUST00000140150 Lpin2-009 71238662-71239400 retained_intron
  ENSMUST00000142842 Lpin2-004 71182560-71235119 retained_intron
  ENSMUST00000149973 Lpin2-007 71183723-71222508 retained_intron
  ENSMUST00000154507 Lpin2-010 71238672-71246454 nonsense_mediated_decay
  ENSMUST00000156565 Lpin2-006 71242400-71245907 retained_intron
  ENSMUST00000156570 Lpin2-002 71183556-71232306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000126681ENSMUST00000129635ENSMUST00000156570
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000126681 N/A 1.862±0.00 N/A N/A 1.543±0.00 2.373±0.63 N/A N/A 2.556±0.56 6.902±0.66 0.104±0.00 3.337±0.95 N/A N/A
ENSMUST00000129635 1.838±0.77 N/A 6.150±0.00 6.184±2.52 3.091±0.00 N/A 0.732±0.26 3.598±2.51 10.997±7.34 4.481±0.03 0.422±0.11 7.312±2.93 5.303±1.55 3.713±1.20
ENSMUST00000156570 N/A 5.500±1.49 N/A 5.044±0.00 N/A 3.071±0.23 N/A 4.676±0.00 N/A N/A N/A 5.108±0.36 N/A 5.207±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000157 CIL_000157_0002 CGP 17:71019521-71249817
CIL_000158 CIL_000158_0002 CGP 17:71182560-71310965

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003713 IEA:IDA transcription coactivator activity
GO:0005634 IEA nucleus
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005829 IDA cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006629 IEA:IDA lipid metabolic process
GO:0006631 IEA fatty acid metabolic process
GO:0008195 IEA:IDA phosphatidate phosphatase activity
GO:0016311 IEA dephosphorylation
GO:0045944 IEA:IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061214 lipin2 lipin 2 protein_coding Danio_rerio
ENSG00000101577 LPIN2 lipin 2 protein_coding Homo_sapiens

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