C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024335 Brd2 10090 - 17:34112023-34122634 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025193 Brd2-001 34112023-34122317 protein_coding
  ENSMUST00000095347 Brd2-005 34112363-34118489 protein_coding
  ENSMUST00000114242 Brd2-002 34112023-34121747 protein_coding
  ENSMUST00000142570 Brd2-008 34112684-34113732 retained_intron
  ENSMUST00000148143 Brd2-007 34113759-34114951 retained_intron
  ENSMUST00000151986 Brd2-004 34114085-34121988 protein_coding
  ENSMUST00000154232 Brd2-003 34112030-34120411 nonsense_mediated_decay
  ENSMUST00000155286 Brd2-006 34114764-34115470 retained_intron
  ENSMUST00000173032 Brd2-010 34113761-34114977 protein_coding
  ENSMUST00000173204 Brd2-009 34113796-34115076 nonsense_mediated_decay
  ENSMUST00000177828 Brd2-012 34119558-34122619 processed_transcript
  ENSMUST00000179687 Brd2-011 34119867-34122634 processed_transcript
  ENSMUST00000179722 Brd2-014 34119528-34121950 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025193ENSMUST00000095347ENSMUST00000114242ENSMUST00000142570ENSMUST00000154232ENSMUST00000173032
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025193 16.333±6.12 32.923±3.91 8.677±1.66 22.770±2.64 22.269±5.54 22.526±2.91 5.254±1.69 14.266±2.45 7.799±3.03 28.080±1.40 7.716±0.38 21.801±4.97 11.242±3.46 16.164±1.56
ENSMUST00000095347 10.666±1.13 N/A 26.738±9.06 24.129±4.07 27.710±14.52 N/A 6.923±1.09 10.698±2.29 12.166±4.94 N/A 10.420±0.85 61.642±23.95 35.473±17.54 34.816±6.95
ENSMUST00000114242 N/A N/A N/A N/A 5.987±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.165±0.00 N/A N/A
ENSMUST00000154232 12.573±3.93 9.407±2.14 13.911±0.50 12.464±0.61 13.229±3.53 8.719±1.86 5.286±0.39 8.562±1.80 5.703±2.29 14.317±2.39 5.792±0.67 12.871±2.93 14.570±6.95 8.557±0.58
ENSMUST00000173032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 141.485±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006334 ISS nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0016568 IEA chromatin modification
GO:0070577 ISS lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022280 brd2a bromodomain-containing 2a protein_coding Danio_rerio
ENSDARG00000046087 brd2b bromodomain containing 2b protein_coding Danio_rerio
ENSG00000204256 BRD2 bromodomain containing 2 protein_coding Homo_sapiens

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