C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription elongation regulator 1 (CA150)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024498 Tcerg1 10090 + 18:42511510-42575551 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025375 Tcerg1-001 42511510-42575551 protein_coding
  ENSMUST00000173642 Tcerg1-002 42511523-42574844 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025375ENSMUST00000173642
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025375 3.388±1.54 N/A 8.141±0.64 19.303±2.26 1.830±0.36 2.097±0.56 1.950±0.48 1.853±0.95 8.065±6.67 3.010±0.50 4.033±0.79 8.708±6.20 14.537±7.67 3.797±0.44
ENSMUST00000173642 4.748±3.09 9.895±0.00 1.559±0.26 6.330±0.00 0.894±0.00 4.316±1.52 1.117±0.47 0.820±0.00 1.393±0.62 1.256±0.00 N/A 10.825±2.73 9.035±9.62 4.847±4.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001AK CIL_0001AK_0002 CGP 18:42394539-42575551
CIL_0001AD CIL_0001AD_0002 CGP 18:42511510-42579652

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001103 IEA RNA polymerase II repressing transcription factor binding
GO:0001106 IEA RNA polymerase II transcription corepressor activity
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 ISS transcription, DNA-templated
GO:0044822 IEA poly(A) RNA binding
GO:0070064 IDA proline-rich region binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025314 tcerg1a transcription elongation regulator 1a (CA150) protein_coding Danio_rerio
ENSDARG00000030665 CU929230.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000113649 TCERG1 transcription elongation regulator 1 protein_coding Homo_sapiens

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