C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation regulator 1 (CA150)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025375 Tcerg1-001 ENSMUSG00000024498 10090 + 18:42511510-42575551 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025375
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025375 3.388±1.54 8.141±0.64 19.303±2.26 1.830±0.36 2.097±0.56 1.950±0.48 1.853±0.95 8.065±6.67 3.010±0.50 4.033±0.79 8.708±6.20 14.537±7.67 3.797±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001AK CIL_0001AK_0002 CGP 18:42394539-42575551
CIL_0001AD CIL_0001AD_0002 CGP 18:42511510-42579652

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001103 IEA RNA polymerase II repressing transcription factor binding
GO:0001106 IEA RNA polymerase II transcription corepressor activity
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 ISS transcription, DNA-templated
GO:0044822 IEA poly(A) RNA binding
GO:0070064 IDA proline-rich region binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296702 TCERG1-001 protein_coding Homo_sapiens 0 5415
ENST00000394421 TCERG1-007 protein_coding Homo_sapiens 0 3387
ENST00000503741 TCERG1-008 processed_transcript Homo_sapiens 0 462
ENST00000504116 TCERG1-006 processed_transcript Homo_sapiens 0 241
ENST00000505285 TCERG1-005 retained_intron Homo_sapiens 0 658
ENST00000506524 TCERG1-002 retained_intron Homo_sapiens 0 1757
ENST00000507175 TCERG1-012 retained_intron Homo_sapiens 0 1483
ENST00000509787 TCERG1-011 processed_transcript Homo_sapiens 0 470
ENST00000510724 TCERG1-014 processed_transcript Homo_sapiens 0 377
ENST00000511077 TCERG1-003 retained_intron Homo_sapiens 0 1133
ENST00000513298 TCERG1-015 retained_intron Homo_sapiens 0 370
ENST00000514567 TCERG1-009 processed_transcript Homo_sapiens 0 396
ENST00000514719 TCERG1-010 retained_intron Homo_sapiens 0 569
ENST00000515203 TCERG1-004 processed_transcript Homo_sapiens 0 442
ENST00000549332 TCERG1-016 nonsense_mediated_decay Homo_sapiens 0 4283

Loading