C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription elongation regulator 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113649 TCERG1 9606 + 5:146447311-146511961 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296702 TCERG1-001 146447312-146511961 protein_coding
  ENST00000394421 TCERG1-007 146447332-146511023 protein_coding
  ENST00000503741 TCERG1-008 146503828-146509245 processed_transcript
  ENST00000504116 TCERG1-006 146499573-146503539 processed_transcript
  ENST00000505285 TCERG1-005 146492869-146503539 retained_intron
  ENST00000506524 TCERG1-002 146481176-146511508 retained_intron
  ENST00000507175 TCERG1-012 146447311-146480216 retained_intron
  ENST00000509787 TCERG1-011 146503032-146504202 processed_transcript
  ENST00000509810 TCERG1-013 146478418-146480518 retained_intron
  ENST00000510724 TCERG1-014 146462057-146470739 processed_transcript
  ENST00000511077 TCERG1-003 146507371-146511505 retained_intron
  ENST00000513298 TCERG1-015 146459215-146469809 retained_intron
  ENST00000514567 TCERG1-009 146503419-146507177 processed_transcript
  ENST00000514719 TCERG1-010 146503471-146507348 retained_intron
  ENST00000515203 TCERG1-004 146478525-146492965 processed_transcript
  ENST00000549332 TCERG1-016 146447346-146510765 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296702ENST00000394421ENST00000506524ENST00000507175ENST00000509810ENST00000511077ENST00000514567ENST00000549332
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296702 N/A 1.724±0.00 N/A 3.196±0.00 1.282±0.00 N/A 0.727±0.00 N/A 1.045±0.00 0.804±0.00 N/A 3.016±0.54 2.781±0.00 1.250±0.00
ENST00000394421 2.352±0.00 4.753±0.00 0.940±0.00 5.530±0.00 4.091±0.27 2.960±0.00 1.160±0.77 1.832±1.22 1.742±1.21 3.169±0.64 0.613±0.00 4.346±2.09 3.071±1.57 7.808±0.00
ENST00000506524 N/A N/A 0.407±0.00 2.611±1.15 1.897±0.32 N/A 0.996±0.00 0.762±0.00 1.696±1.35 2.106±1.31 N/A 1.897±0.63 N/A 7.425±0.00
ENST00000507175 N/A N/A 0.914±0.00 N/A N/A 3.618±0.00 1.365±0.00 2.259±0.00 5.188±0.00 N/A N/A 5.128±0.00 N/A N/A
ENST00000509810 N/A N/A 2.522±0.00 N/A N/A N/A N/A N/A N/A 9.688±0.00 N/A N/A N/A N/A
ENST00000511077 N/A N/A N/A N/A 3.264±0.00 N/A N/A 2.433±0.20 0.740±0.00 1.844±0.00 0.633±0.00 3.380±0.00 1.681±0.00 N/A
ENST00000514567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.962±0.00 17.617±0.00 44.084±0.00
ENST00000549332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.832±1.58 N/A N/A 5.461±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001AK CIL_0001AK_0001 CGP 5:146339024-146511961
CIL_0001AD CIL_0001AD_0001 CGP 5:146447311-146516190

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0001106 IDA RNA polymerase II transcription corepressor activity
GO:0003713 TAS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0044822 IDA poly(A) RNA binding
GO:0070064 IEA proline-rich region binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025314 tcerg1a transcription elongation regulator 1a (CA150) protein_coding Danio_rerio
ENSDARG00000030665 CU929230.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000024498 Tcerg1 transcription elongation regulator 1 (CA150) protein_coding Mus_musculus

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