C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 51 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024797 Vps51 10090 - 19:6067842-6080324 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025711 Vps51-201 6067994-6077197 protein_coding
  ENSMUST00000159211 Vps51-003 6070081-6077203 retained_intron
  ENSMUST00000159475 Vps51-010 6068217-6069071 protein_coding
  ENSMUST00000159832 Vps51-001 6067842-6080324 protein_coding
  ENSMUST00000159869 Vps51-008 6068868-6069698 retained_intron
  ENSMUST00000160233 Vps51-006 6071482-6077198 nonsense_mediated_decay
  ENSMUST00000160324 Vps51-011 6068051-6069150 retained_intron
  ENSMUST00000160519 Vps51-007 6071417-6076868 retained_intron
  ENSMUST00000160590 Vps51-004 6075903-6077200 protein_coding
  ENSMUST00000161222 Vps51-012 6068749-6069613 retained_intron
  ENSMUST00000161634 Vps51-009 6067990-6069319 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025711ENSMUST00000159832
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025711 21.166±1.12 28.808±2.11 22.453±1.28 31.641±3.42 19.055±6.11 27.811±1.82 8.991±1.70 15.827±1.69 15.011±1.79 20.770±0.69 5.953±0.68 33.234±9.06 17.387±2.84 12.314±3.17
ENSMUST00000159832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.152±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000938 ISS GARP complex
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005794 ISS Golgi apparatus
GO:0006869 IEA lipid transport
GO:0006914 IEA autophagy
GO:0015031 IEA protein transport
GO:0042147 ISS retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062016 vps51 vacuolar protein sorting 51 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000149823 VPS51 vacuolar protein sorting 51 homolog (S. cerevisiae) protein_coding Homo_sapiens

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