C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 51 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149823 VPS51 9606 + 11:65089324-65111860 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000279281 VPS51-001 65096159-65111860 protein_coding
  ENST00000526578 VPS51-003 65096479-65107885 protein_coding
  ENST00000526856 VPS51-010 65109344-65110891 protein_coding
  ENST00000527646 VPS51-013 65105408-65111707 processed_transcript
  ENST00000528050 VPS51-016 65096214-65097158 retained_intron
  ENST00000528588 VPS51-015 65089324-65107628 protein_coding
  ENST00000529180 VPS51-007 65096227-65108399 protein_coding
  ENST00000530673 VPS51-014 65110482-65111672 protein_coding
  ENST00000530773 VPS51-011 65096115-65108319 protein_coding
  ENST00000531146 VPS51-008 65109055-65109857 retained_intron
  ENST00000533487 VPS51-002 65096244-65108020 nonsense_mediated_decay
  ENST00000533656 VPS51-005 65096227-65107727 retained_intron
  ENST00000533827 VPS51-012 65109291-65111674 nonsense_mediated_decay
  ENST00000534124 VPS51-006 65096227-65108350 nonsense_mediated_decay
  ENST00000534557 VPS51-004 65096753-65108494 protein_coding
  ENST00000534591 VPS51-009 65109318-65111664 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000279281ENST00000526856ENST00000527646ENST00000528050ENST00000529180ENST00000531146
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000279281 N/A 16.602±0.00 2.744±0.00 13.753±8.10 N/A 16.740±13.45 5.499±3.39 10.601±6.50 4.981±0.00 6.373±4.24 18.514±0.00 42.047±36.08 24.993±4.58 21.363±0.00
ENST00000526856 N/A 46.742±0.00 N/A N/A N/A 41.971±0.00 N/A N/A N/A N/A 3.103±0.00 118.867±0.00 N/A 45.124±0.00
ENST00000527646 66.807±0.00 34.993±0.00 N/A N/A N/A 17.128±0.00 N/A 27.518±0.00 17.508±0.00 16.626±0.00 N/A 94.608±0.00 22.839±0.00 27.755±0.00
ENST00000528050 N/A N/A 18.985±0.00 22.585±0.00 18.100±0.00 20.724±0.00 13.884±0.00 27.907±0.00 N/A 11.385±0.00 8.402±0.00 22.564±0.00 N/A N/A
ENST00000529180 N/A N/A N/A N/A 4.574±0.00 N/A N/A N/A 10.446±0.00 N/A N/A 5.693±0.00 30.198±3.58 N/A
ENST00000531146 N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.464±0.00 4.701±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O4 CIL_0005O4_0002 CGP 11:65089324-65116384

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000145 IEA exocyst
GO:0000775 IEA chromosome, centromeric region
GO:0000938 IDA GARP complex
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005794 IDA Golgi apparatus
GO:0006869 IEA lipid transport
GO:0006893 IEA Golgi to plasma membrane transport
GO:0006914 IMP autophagy
GO:0007067 IEA mitotic nuclear division
GO:0015031 IEA protein transport
GO:0016021 TAS integral component of membrane
GO:0017119 IEA Golgi transport complex
GO:0042147 IDA retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062016 vps51 vacuolar protein sorting 51 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000024797 Vps51 vacuolar protein sorting 51 homolog (S. cerevisiae) protein_coding Mus_musculus

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