C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: D4, zinc and double PHD fingers family 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024826 Dpf2 10090 - 19:5896516-5913010 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025746 Dpf2-009 5897387-5907059 nonsense_mediated_decay
  ENSMUST00000118623 Dpf2-002 5897387-5912792 protein_coding
  ENSMUST00000123029 Dpf2-005 5904147-5912777 retained_intron
  ENSMUST00000129816 Dpf2-007 5898543-5903332 retained_intron
  ENSMUST00000136983 Dpf2-001 5896516-5912871 protein_coding
  ENSMUST00000137465 Dpf2-008 5899324-5902441 retained_intron
  ENSMUST00000142995 Dpf2-006 5905126-5912769 retained_intron
  ENSMUST00000154365 Dpf2-004 5905537-5913010 processed_transcript
  ENSMUST00000155937 Dpf2-003 5911826-5912807 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025746ENSMUST00000118623ENSMUST00000123029ENSMUST00000129816ENSMUST00000136983
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025746 9.126±1.43 10.156±2.23 14.466±1.45 22.170±0.52 15.116±5.64 9.650±2.80 4.202±0.34 8.237±2.61 9.170±6.09 11.258±1.09 N/A 13.488±5.30 13.057±7.93 6.976±3.62
ENSMUST00000118623 18.807±3.41 10.500±2.94 14.799±1.51 31.953±19.00 20.365±4.08 15.464±1.56 16.451±1.84 15.215±3.16 11.128±5.44 22.663±5.00 20.657±0.90 28.852±13.29 9.625±3.45 12.056±5.95
ENSMUST00000123029 N/A N/A N/A 12.526±0.00 N/A N/A N/A N/A N/A N/A N/A 24.521±0.00 18.435±10.03 12.961±0.00
ENSMUST00000129816 N/A N/A N/A 5.077±0.00 N/A N/A N/A N/A N/A N/A N/A 8.511±0.00 4.053±0.91 1.947±0.00
ENSMUST00000136983 N/A N/A N/A N/A N/A N/A N/A N/A 3.497±0.47 N/A N/A N/A N/A 1.562±1.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IEA centrosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012219 dpf2 D4, zinc and double PHD fingers family 2 protein_coding Danio_rerio
ENSDARG00000037291 dpf2l D4, zinc and double PHD fingers family 2, like protein_coding Danio_rerio
ENSG00000133884 DPF2 D4, zinc and double PHD fingers family 2 protein_coding Homo_sapiens

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