C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coronin, actin binding protein 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024835 Coro1b 10090 + 19:4148619-4154035 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000008893 Coro1b-001 4148619-4154035 protein_coding
  ENSMUST00000123874 Coro1b-002 4148619-4150504 protein_coding
  ENSMUST00000134194 Coro1b-005 4148661-4151499 processed_transcript
  ENSMUST00000135498 Coro1b-008 4151370-4153444 retained_intron
  ENSMUST00000140419 Coro1b-007 4150543-4152808 retained_intron
  ENSMUST00000142878 Coro1b-003 4148628-4149554 retained_intron
  ENSMUST00000143613 Coro1b-006 4148664-4150253 retained_intron
  ENSMUST00000148189 Coro1b-009 4151580-4153661 retained_intron
  ENSMUST00000148733 Coro1b-004 4148632-4149634 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008893ENSMUST00000135498ENSMUST00000140419ENSMUST00000143613ENSMUST00000148189
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008893 116.616±10.12 70.941±19.49 58.256±1.31 37.608±20.77 119.332±13.20 239.691±39.31 24.454±5.90 64.074±4.58 40.079±5.12 93.169±5.59 5.249±1.24 102.672±39.35 59.609±33.68 24.453±10.03
ENSMUST00000135498 N/A N/A N/A N/A 78.901±0.00 N/A N/A N/A N/A N/A N/A 38.001±0.00 34.139±0.00 N/A
ENSMUST00000140419 N/A N/A N/A 24.685±0.00 N/A N/A N/A N/A N/A N/A 2.616±0.00 21.823±0.00 26.931±0.00 N/A
ENSMUST00000143613 N/A N/A N/A 20.696±0.00 N/A N/A N/A N/A N/A N/A N/A 35.537±0.00 44.467±0.00 N/A
ENSMUST00000148189 N/A N/A N/A 18.772±0.00 N/A N/A N/A N/A N/A N/A N/A 25.919±0.00 28.954±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IEA stress fiber
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005884 IEA actin filament
GO:0005925 IEA focal adhesion
GO:0015629 IBA actin cytoskeleton
GO:0016477 IEA cell migration
GO:0030027 IEA lamellipodium
GO:0030036 IBA actin cytoskeleton organization
GO:0031252 IEA cell leading edge
GO:0031529 IEA ruffle organization
GO:0034316 IEA negative regulation of Arp2/3 complex-mediated actin nucleation
GO:0035767 IEA endothelial cell chemotaxis
GO:0042060 IEA wound healing
GO:0042802 IEA identical protein binding
GO:0051015 IBA actin filament binding
GO:0051017 IEA actin filament bundle assembly
GO:0070062 IEA extracellular vesicular exosome
GO:0071933 IEA Arp2/3 complex binding
GO:0090135 IEA actin filament branching
GO:1902463 IEA protein localization to cell leading edge
GO:2000394 IEA positive regulation of lamellipodium morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008660 coro1b coronin, actin binding protein, 1B protein_coding Danio_rerio
ENSG00000172725 CORO1B coronin, actin binding protein, 1B protein_coding Homo_sapiens

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