C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coronin, actin binding protein 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000008893 Coro1b-001 ENSMUSG00000024835 10090 + 19:4148619-4154035 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008893
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008893 116.616±10.12 70.941±19.49 58.256±1.31 37.608±20.77 119.332±13.20 239.691±39.31 24.454±5.90 64.074±4.58 40.079±5.12 93.169±5.59 5.249±1.24 102.672±39.35 59.609±33.68 24.453±10.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IEA stress fiber
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005884 IEA actin filament
GO:0005925 IEA focal adhesion
GO:0015629 IBA actin cytoskeleton
GO:0016477 IEA cell migration
GO:0030027 IEA lamellipodium
GO:0030036 IBA actin cytoskeleton organization
GO:0031252 IEA cell leading edge
GO:0031529 IEA ruffle organization
GO:0034316 IEA negative regulation of Arp2/3 complex-mediated actin nucleation
GO:0035767 IEA endothelial cell chemotaxis
GO:0042060 IEA wound healing
GO:0042802 IEA identical protein binding
GO:0051015 IBA actin filament binding
GO:0051017 IEA actin filament bundle assembly
GO:0070062 IEA extracellular vesicular exosome
GO:0071933 IEA Arp2/3 complex binding
GO:0090135 IEA actin filament branching
GO:1902463 IEA protein localization to cell leading edge
GO:2000394 IEA positive regulation of lamellipodium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341356 CORO1B-001 protein_coding Homo_sapiens 0 1683
ENST00000393893 CORO1B-201 protein_coding Homo_sapiens 0 1676
ENST00000453768 CORO1B-003 retained_intron Homo_sapiens 0 968
ENST00000537042 CORO1B-004 nonsense_mediated_decay Homo_sapiens 0 968
ENST00000539724 CORO1B-007 processed_transcript Homo_sapiens 0 394
ENST00000545016 CORO1B-008 protein_coding Homo_sapiens 0 536
ENST00000545736 CORO1B-002 retained_intron Homo_sapiens 0 593
ENST00000616321 CORO1B-009 nonsense_mediated_decay Homo_sapiens 0 970

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