C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coronin, actin binding protein, 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172725 CORO1B 9606 - 11:67435510-67443821 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341356 CORO1B-001 67438076-67443512 protein_coding
  ENST00000393893 CORO1B-201 67438048-67443821 protein_coding
  ENST00000453768 CORO1B-003 67440791-67443472 retained_intron
  ENST00000537042 CORO1B-004 67438082-67443456 nonsense_mediated_decay
  ENST00000539724 CORO1B-007 67438283-67440199 processed_transcript
  ENST00000539970 CORO1B-005 67440231-67440521 retained_intron
  ENST00000545016 CORO1B-008 67441769-67443821 protein_coding
  ENST00000545736 CORO1B-002 67441236-67443487 retained_intron
  ENST00000616321 CORO1B-009 67435510-67443484 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341356ENST00000393893ENST00000453768ENST00000545736ENST00000616321
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341356 41.856±0.00 38.403±0.00 N/A 7.210±0.00 20.925±14.03 19.320±16.07 5.323±0.00 26.406±0.00 16.194±0.00 21.881±0.00 N/A 43.135±16.19 41.733±9.79 17.080±5.93
ENST00000393893 6.954±0.00 N/A 1.827±0.00 3.454±1.17 N/A N/A 1.500±1.23 8.057±3.69 3.425±1.97 10.203±0.00 7.663±0.00 22.942±10.96 21.766±12.38 10.493±0.00
ENST00000453768 N/A N/A 2.569±0.00 N/A N/A 7.279±0.00 0.681±0.00 1.061±0.00 N/A N/A 0.436±0.00 6.425±0.00 N/A N/A
ENST00000545736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.887±0.00 N/A N/A
ENST00000616321 N/A N/A N/A 0.610±0.00 0.757±0.00 N/A N/A 2.360±0.00 N/A N/A 0.113±0.00 0.524±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005884 IDA actin filament
GO:0005925 IDA focal adhesion
GO:0015629 IBA actin cytoskeleton
GO:0016477 IDA cell migration
GO:0030027 IDA lamellipodium
GO:0030036 IBA actin cytoskeleton organization
GO:0031252 IDA cell leading edge
GO:0031529 IDA ruffle organization
GO:0034316 IDA negative regulation of Arp2/3 complex-mediated actin nucleation
GO:0035767 IDA endothelial cell chemotaxis
GO:0042060 IDA wound healing
GO:0042802 IDA identical protein binding
GO:0051015 IBA actin filament binding
GO:0051017 IDA actin filament bundle assembly
GO:0070062 IDA extracellular vesicular exosome
GO:0071933 IDA Arp2/3 complex binding
GO:0090135 IDA actin filament branching
GO:1902463 IDA protein localization to cell leading edge
GO:2000394 IDA positive regulation of lamellipodium morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008660 coro1b coronin, actin binding protein, 1B protein_coding Danio_rerio
ENSMUSG00000024835 Coro1b coronin, actin binding protein 1B protein_coding Mus_musculus

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