C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 3110040N11 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025102 3110040N11Rik 10090 - 7:81782182-81789478 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026092 3110040N11Rik-001 81782182-81789478 protein_coding
  ENSMUST00000141075 3110040N11Rik-005 81783031-81788664 processed_transcript
  ENSMUST00000142557 3110040N11Rik-002 81783031-81789469 processed_transcript
  ENSMUST00000152620 3110040N11Rik-003 81783104-81789465 nonsense_mediated_decay
  ENSMUST00000154937 3110040N11Rik-004 81783050-81789109 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026092ENSMUST00000142557ENSMUST00000152620
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026092 4.320±1.59 1.677±0.49 6.753±1.39 3.995±1.63 2.412±0.52 2.765±0.69 1.833±0.13 3.515±0.79 4.296±2.51 1.317±0.07 2.725±0.74 3.962±1.58 4.901±1.78 2.447±0.96
ENSMUST00000142557 6.189±1.40 2.164±0.00 5.593±0.92 9.826±5.14 4.677±1.56 5.424±1.23 4.295±0.89 6.072±2.05 5.412±2.13 2.551±0.54 6.027±0.00 10.643±7.47 10.957±6.82 5.794±6.49
ENSMUST00000152620 8.912±2.13 7.283±0.74 9.594±2.06 4.700±0.37 4.920±1.32 6.569±2.45 4.689±1.60 7.988±1.72 6.185±0.65 3.792±0.84 3.830±1.08 6.737±2.80 6.934±1.55 2.320±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026I CIL_00026I_0002 CGP 7:81762925-81789478
CIL_0001L5 CIL_0001L5_0002 CGP 7:81782182-81829431

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000097310 C25H15orf40 chromosome 15 open reading frame 40 protein_coding Danio_rerio
ENSG00000169609 C15orf40 chromosome 15 open reading frame 40 protein_coding Homo_sapiens

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