C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130549 Sema4g-002 ENSMUSG00000025207 10090 + 19:44989291-45003397 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000130549
Transcript ID Adipose Adrenal Bladder Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000130549 1.090±0.21 1.783±0.47 8.430±2.55 29.542±1.69 76.065±4.85 13.171±1.90 32.346±21.33 0.632±0.07 2.060±0.50 3.658±1.87 2.142±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BC CIL_0008BC_0002 VISTA 19:44398597-45000718
CIL_0008BD CIL_0008BD_0002 VISTA 19:44496521-45098014
CIL_0007U1 CIL_0007U1_0002 VISTA 19:44501251-45102539
CIL_000940 CIL_000940_0002 VISTA 19:44925545-45526320
CIL_0000EY CIL_0000EY_0002 CGP 19:44931119-45003397

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007399 IEA nervous system development
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000210633 SEMA4G-001 protein_coding Homo_sapiens 0 3243
ENST00000370250 SEMA4G-002 protein_coding Homo_sapiens 0 3483
ENST00000517724 SEMA4G-008 protein_coding Homo_sapiens 0 2106
ENST00000518124 SEMA4G-009 protein_coding Homo_sapiens 0 628
ENST00000518244 SEMA4G-010 processed_transcript Homo_sapiens 0 420
ENST00000518948 SEMA4G-011 retained_intron Homo_sapiens 0 215
ENST00000519649 SEMA4G-007 protein_coding Homo_sapiens 0 2115
ENST00000519756 SEMA4G-013 processed_transcript Homo_sapiens 0 715
ENST00000521006 SEMA4G-003 nonsense_mediated_decay Homo_sapiens 0 3980
ENST00000523148 MRPL43-013 protein_coding Homo_sapiens 0 322
ENST00000613292 SEMA4G-201 protein_coding Homo_sapiens 0 573

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