C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ladybird homeobox homolog 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025216 Lbx1 10090 - 19:45232684-45235812 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000099401 Lbx1-001 45232684-45235812 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000099401
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000099401 0.018±0.00 0.048±0.03 0.019±0.00 1.788±1.31 0.334±0.49 0.030±0.00 0.038±0.01 0.018±0.01 0.028±0.01 24.689±1.97 0.172±0.12 0.017±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000940 CIL_000940_0002 VISTA 19:44925545-45526320
CIL_0007ZR CIL_0007ZR_0002 VISTA 19:45042853-45643685
CIL_0001C6 CIL_0001C6_0003 CGP 19:45150680-45235812
CIL_00089J CIL_00089J_0002 VISTA 19:45175437-45776961
CIL_000942 CIL_000942_0002 VISTA 19:45193585-45794869
CIL_0007PC CIL_0007PC_0002 UCNEbase 19:45225898-45494518
CIL_0005NA CIL_0005NA_0002 CGP 19:45232684-45533341

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001947 IMP heart looping
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007517 IEA muscle organ development
GO:0008285 IMP negative regulation of cell proliferation
GO:0021522 IGI spinal cord motor neuron differentiation
GO:0021920 IMP regulation of transcription from RNA polymerase II promoter involved in spinal cord association neuron specification
GO:0043565 IEA sequence-specific DNA binding
GO:0045665 IMP negative regulation of neuron differentiation
GO:0048663 IMP neuron fate commitment
GO:0048664 IGI neuron fate determination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018321 lbx1a ladybird homeobox 1a protein_coding Danio_rerio
ENSG00000138136 LBX1 ladybird homeobox 1 protein_coding Homo_sapiens

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