C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005NA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138136-ENSG00000166167 CGP 9606 10:101226195-101557321
GeneTranscriptPositionBiotype
ENSG00000138136 (LBX1)
ladybird homeobox 1 		ENST00000370193 (LBX1-001) 101226195-101229794 protein_coding
ENSG00000222238 (RNU2-43P)
RNA, U2 small nuclear 43, pseudogene 		ENST00000410306 (RNU2-43P-201) 101307529-101307718 snRNA
ENSG00000222414 (RNU2-59P)
RNA, U2 small nuclear 59, pseudogene 		ENST00000410482 (RNU2-59P-201) 101364845-101365035 snRNA
ENSG00000225208 (RP11-107I14.2)
 ENST00000442188 (RP11-107I14.2-001) 101311018-101311505 lincRNA
ENSG00000227128 (LBX1-AS1)
LBX1 antisense RNA 1 (head to head) 		ENST00000430651 (LBX1-AS1-006) 101236068-101238848 antisense
ENST00000434878 (LBX1-AS1-005) 101237938-101270148 antisense
ENST00000454527 (LBX1-AS1-003) 101232252-101238678 antisense
ENST00000456391 (LBX1-AS1-004) 101238003-101238859 antisense
ENST00000546988 (LBX1-AS1-002) 101229611-101238237 retained_intron
ENST00000547077 (LBX1-AS1-001) 101229594-101232605 retained_intron
ENSG00000229649 (RP11-107I14.4)
 ENST00000422661 (RP11-107I14.4-001) 101252821-101263550 lincRNA
CIL_0005NA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025216-ENSMUSG00000025217 CGP 10090 19:45232684-45533341
GeneTranscriptPositionBiotype
ENSMUSG00000025216 (Lbx1)
ladybird homeobox homolog 1 (Drosophila) 		ENSMUST00000099401 (Lbx1-001) 45232684-45235812 protein_coding
ENSMUSG00000025217 (Btrc)
beta-transducin repeat containing protein 		ENSMUST00000065601 (Btrc-201) 45363734-45533341 protein_coding
ENSMUST00000111936 (Btrc-202) 45363734-45533341 protein_coding
ENSMUSG00000057605 (Gm6807)
predicted gene 6807 		ENSMUST00000077435 (Gm6807-201) 45450308-45451195 processed_pseudogene
ENSMUSG00000099440 (RP23-188J8.5)
predicted gene 29593 		ENSMUST00000189827 (RP23-188J8.5-001) 45311300-45312247 lincRNA
ENSMUSG00000100417 (RP23-188J8.2)
predicted gene 28578 		ENSMUST00000187727 (RP23-188J8.2-002) 45335470-45338309 lincRNA
ENSMUST00000187795 (RP23-188J8.2-003) 45329649-45330394 lincRNA
ENSMUST00000189196 (RP23-188J8.2-001) 45329629-45338323 lincRNA
ENSMUSG00000100618 (RP23-188J8.3)
predicted gene 29595 		ENSMUST00000186981 (RP23-188J8.3-002) 45300454-45311011 lincRNA
ENSMUST00000187954 (RP23-188J8.3-001) 45300463-45303034 lincRNA
ENSMUSG00000102057 (RP23-188J8.4)
predicted gene 29594 		ENSMUST00000191181 (RP23-188J8.4-001) 45317893-45318429 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005NA_0001ENSG00000138136ENST00000370193ENSG00000222238ENST00000410306ENSG00000222414ENST00000410482ENSG00000225208ENST00000442188ENSG00000227128ENST00000430651ENST00000434878ENST00000454527ENST00000456391ENST00000546988ENST00000547077ENSG00000229649ENST00000422661CIL_0005NA_0002ENSMUSG00000025216ENSMUST00000099401ENSMUSG00000025217ENSMUST00000065601ENSMUST00000111936ENSMUSG00000057605ENSMUST00000077435ENSMUSG00000099440ENSMUST00000189827ENSMUSG00000100417ENSMUST00000187727ENSMUST00000187795ENSMUST00000189196ENSMUSG00000100618ENSMUST00000186981ENSMUST00000187954ENSMUSG00000102057ENSMUST00000191181
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005NA_0001ENSG00000138136ENST00000370193ENSG00000222238ENST00000410306ENSG00000222414ENST00000410482ENSG00000225208ENST00000442188ENSG00000227128ENST00000430651ENST00000454527ENST00000456391ENST00000546988ENST00000547077ENSG00000229649ENST00000422661CIL_0005NA_0002ENSMUSG00000025216ENSMUST00000099401ENSMUSG00000025217ENSMUST00000065601ENSMUST00000111936ENSMUSG00000057605ENSMUST00000077435ENSMUSG00000099440ENSMUST00000189827ENSMUSG00000100417ENSMUST00000187727ENSMUST00000187795ENSMUST00000189196ENSMUSG00000100618ENSMUST00000186981ENSMUST00000187954ENSMUSG00000102057ENSMUST00000191181
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138136 ENST00000370193 N/A N/A N/A 0.047±0.01 0.434±0.00 N/A N/A N/A N/A 0.203±0.00 5.692±4.88 0.035±0.00 0.063±0.03 N/A
ENSG00000222238 ENST00000410306 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.340±0.00 N/A N/A N/A N/A
ENSG00000222414 ENST00000410482 N/A N/A 1.647±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.266±0.00 N/A N/A
ENSG00000225208 ENST00000442188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.315±0.00
ENSG00000227128 ENST00000430651 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.00 0.286±0.00 N/A 0.031±0.00 0.738±0.00
ENST00000434878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454527 N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.546±1.70
ENST00000456391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.143±0.00
ENST00000546988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A N/A
ENST00000547077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.162±0.00 N/A
ENSG00000229649 ENST00000422661 0.024±0.00 0.092±0.00 N/A 0.078±0.00 0.027±0.00 0.016±0.00 0.048±0.00 0.096±0.00 0.037±0.00 0.086±0.00 N/A 0.036±0.03 N/A 0.047±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025216 ENSMUST00000099401 0.018±0.00 0.048±0.03 0.019±0.00 1.788±1.31 0.334±0.49 N/A 0.030±0.00 0.038±0.01 0.018±0.01 0.028±0.01 24.689±1.97 0.172±0.12 0.017±0.01 N/A
ENSMUSG00000025217 ENSMUST00000065601 3.171±1.40 4.693±1.03 4.679±0.71 8.618±1.57 3.465±0.59 3.151±0.77 1.996±0.74 4.131±1.08 2.690±0.72 5.068±0.63 1.811±0.75 4.258±1.38 1.807±0.87 3.339±1.31
ENSMUST00000111936 N/A N/A N/A N/A N/A N/A N/A N/A 2.492±0.00 N/A N/A 1.900±0.00 0.851±0.16 N/A
ENSMUSG00000057605 ENSMUST00000077435 0.148±0.07 N/A 0.092±0.05 0.625±0.73 0.143±0.10 0.082±0.00 0.040±0.00 0.184±0.06 0.445±0.27 0.211±0.15 N/A 0.155±0.01 0.222±0.09 0.086±0.06
ENSMUSG00000099440 ENSMUST00000189827 N/A N/A N/A 0.165±0.10 N/A N/A N/A N/A 0.020±0.00 N/A 0.079±0.03 N/A N/A 0.066±0.01
ENSMUSG00000100417 ENSMUST00000187727 N/A N/A 0.008±0.00 0.118±0.09 N/A N/A 0.012±0.00 N/A 0.013±0.01 0.019±0.00 0.012±0.00 0.065±0.05 0.015±0.01 0.018±0.01
ENSMUST00000187795 0.055±0.00 N/A 0.008±0.00 N/A 0.131±0.01 N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00
ENSMUST00000189196 N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000100618 ENSMUST00000186981 N/A N/A N/A 0.708±0.00 N/A N/A 0.240±0.08 0.202±0.00 0.055±0.00 N/A 0.817±0.13 0.608±0.28 N/A N/A
ENSMUST00000187954 N/A N/A 0.133±0.00 0.644±0.20 N/A N/A N/A N/A 0.020±0.00 N/A N/A 0.541±0.00 0.034±0.00 N/A
ENSMUSG00000102057 ENSMUST00000191181 N/A N/A N/A 0.181±0.12 N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A

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