C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001C6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000003965-ENSDARG00000018321 CGP 7955 13:28491599-28531740
GeneTranscriptPositionBiotype
ENSDARG00000003965 (tlx1)
T-cell leukemia, homeobox 1 		ENSDART00000006393 (tlx1-001) 28491599-28495901 protein_coding
ENSDARG00000018321 (lbx1a)
ladybird homeobox 1a 		ENSDART00000045351 (lbx1a-001) 28529400-28531740 protein_coding
ENSDARG00000093030 (si:dkey-220o10.3)
si:dkey-220o10.3 		ENSDART00000140989 (si:dkey-220o10.3-001) 28509464-28640760 processed_transcript
ENSDART00000144971 (si:dkey-220o10.3-002) 28500500-28519016 processed_transcript
CIL_0001C6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107807-ENSG00000138136 CGP 9606 10:101130505-101229794
GeneTranscriptPositionBiotype
ENSG00000107807 (TLX1)
T-cell leukemia homeobox 1 		ENST00000370196 (TLX1-001) 101130505-101137789 protein_coding
ENST00000463716 (TLX1-002) 101131728-101134225 protein_coding
ENST00000467928 (TLX1-003) 101131304-101137497 protein_coding
ENST00000525019 (TLX1-005) 101134314-101135516 processed_transcript
ENST00000533319 (TLX1-004) 101132782-101134215 processed_transcript
ENSG00000138136 (LBX1)
ladybird homeobox 1 		ENST00000370193 (LBX1-001) 101226195-101229794 protein_coding
ENSG00000227128 (LBX1-AS1)
LBX1 antisense RNA 1 (head to head) 		ENST00000430651 (LBX1-AS1-006) 101236068-101238848 antisense
ENST00000434878 (LBX1-AS1-005) 101237938-101270148 antisense
ENST00000454527 (LBX1-AS1-003) 101232252-101238678 antisense
ENST00000456391 (LBX1-AS1-004) 101238003-101238859 antisense
ENST00000546988 (LBX1-AS1-002) 101229611-101238237 retained_intron
ENST00000547077 (LBX1-AS1-001) 101229594-101232605 retained_intron
ENSG00000236311 (TLX1NB)
TLX1 neighbor 		ENST00000425505 (TLX1NB-002) 101090308-101131126 processed_transcript
ENST00000445873 (TLX1NB-001) 101089321-101131126 protein_coding
ENSG00000237579 (LINC01514)
long intergenic non-protein coding RNA 1514 		ENST00000434189 (LINC01514-001) 101176323-101194147 lincRNA
ENSG00000270973 (SMARCE1P7)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 7 		ENST00000605515 (SMARCE1P7-001) 101181144-101181951 processed_pseudogene
CIL_0001C6_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025215-ENSMUSG00000025216 CGP 10090 19:45150680-45235812
GeneTranscriptPositionBiotype
ENSMUSG00000025215 (Tlx1)
T cell leukemia, homeobox 1 		ENSMUST00000026236 (Tlx1-001) 45150680-45156943 protein_coding
ENSMUST00000174617 (Tlx1-002) 45151469-45156399 protein_coding
ENSMUSG00000025216 (Lbx1)
ladybird homeobox homolog 1 (Drosophila) 		ENSMUST00000099401 (Lbx1-001) 45232684-45235812 protein_coding
ENSMUSG00000092346 (Tlx1os)
T cell leukemia, homeobox 1, opposite strand 		ENSMUST00000173437 (Tlx1os-001) 45154057-45159304 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001C6_0001ENSDARG00000003965ENSDART00000006393ENSDARG00000018321ENSDART00000045351ENSDARG00000093030ENSDART00000140989ENSDART00000144971CIL_0001C6_0002ENSG00000107807ENST00000370196ENST00000463716ENST00000467928ENST00000525019ENST00000533319ENSG00000138136ENST00000370193ENSG00000227128ENST00000430651ENST00000434878ENST00000454527ENST00000456391ENST00000546988ENST00000547077ENSG00000236311ENST00000425505ENST00000445873ENSG00000237579ENST00000434189ENSG00000270973ENST00000605515CIL_0001C6_0003ENSMUSG00000025215ENSMUST00000026236ENSMUST00000174617ENSMUSG00000025216ENSMUST00000099401ENSMUSG00000092346ENSMUST00000173437
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001C6_0001ENSDARG00000003965ENSDART00000006393ENSDARG00000018321ENSDART00000045351ENSDARG00000093030ENSDART00000140989CIL_0001C6_0002ENSG00000107807ENST00000370196ENST00000467928ENSG00000138136ENST00000370193ENSG00000227128ENST00000430651ENST00000454527ENST00000456391ENST00000546988ENST00000547077ENSG00000236311ENST00000425505ENST00000445873ENSG00000237579ENST00000434189ENSG00000270973ENST00000605515CIL_0001C6_0003ENSMUSG00000025215ENSMUST00000026236ENSMUST00000174617ENSMUSG00000025216ENSMUST00000099401ENSMUSG00000092346ENSMUST00000173437
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003965 ENSDART00000006393 N/A N/A N/A 0.106±0.04 N/A N/A 0.203±0.18 0.029±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000018321 ENSDART00000045351 N/A N/A N/A 0.455±0.23 N/A N/A 0.040±0.00 0.667±0.00 0.031±0.00 N/A N/A N/A N/A N/A
ENSDARG00000093030 ENSDART00000140989 N/A N/A N/A N/A N/A N/A 0.305±0.00 0.187±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000144971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107807 ENST00000370196 N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A N/A N/A 1.011±0.45 0.063±0.01 0.127±0.00
ENST00000463716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467928 N/A N/A N/A N/A N/A N/A N/A N/A 0.149±0.00 N/A N/A 0.887±0.84 0.044±0.00 0.264±0.06
ENST00000525019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138136 ENST00000370193 N/A N/A N/A 0.047±0.01 0.434±0.00 N/A N/A N/A N/A 0.203±0.00 5.692±4.88 0.035±0.00 0.063±0.03 N/A
ENSG00000227128 ENST00000430651 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.00 0.286±0.00 N/A 0.031±0.00 0.738±0.00
ENST00000434878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454527 N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.546±1.70
ENST00000456391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.143±0.00
ENST00000546988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A N/A
ENST00000547077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.162±0.00 N/A
ENSG00000236311 ENST00000425505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 0.168±0.00
ENST00000445873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.234±0.04
ENSG00000237579 ENST00000434189 N/A N/A N/A 0.012±0.00 N/A N/A 0.032±0.00 0.047±0.00 0.030±0.00 N/A N/A 0.027±0.00 N/A 1.048±0.69
ENSG00000270973 ENST00000605515 N/A N/A N/A N/A N/A N/A N/A 0.814±0.00 N/A N/A N/A N/A N/A 0.123±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025215 ENSMUST00000026236 0.012±0.00 N/A N/A 0.219±0.00 0.054±0.04 0.017±0.00 0.059±0.04 N/A 0.013±0.01 N/A N/A 0.031±0.00 0.008±0.00 N/A
ENSMUST00000174617 N/A N/A N/A N/A 0.132±0.00 N/A N/A N/A 0.051±0.00 N/A 0.050±0.00 N/A 0.079±0.00 N/A
ENSMUSG00000025216 ENSMUST00000099401 0.018±0.00 0.048±0.03 0.019±0.00 1.788±1.31 0.334±0.49 N/A 0.030±0.00 0.038±0.01 0.018±0.01 0.028±0.01 24.689±1.97 0.172±0.12 0.017±0.01 N/A
ENSMUSG00000092346 ENSMUST00000173437 N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A 1.444±0.00

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