C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 180
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025227 Tmem180 10090 + 19:46341121-46375252 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000086969 Tmem180-001 46356880-46375252 protein_coding
  ENSMUST00000128041 Tmem180-003 46341121-46375252 protein_coding
  ENSMUST00000128455 Tmem180-005 46356939-46367978 protein_coding
  ENSMUST00000137143 Tmem180-004 46366734-46375252 retained_intron
  ENSMUST00000142994 Tmem180-002 46356935-46375252 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086969ENSMUST00000128041ENSMUST00000137143ENSMUST00000142994
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086969 3.929±0.83 8.440±1.37 1.279±0.25 3.022±1.36 2.536±1.08 10.355±2.67 1.090±0.22 9.724±1.17 5.035±1.97 4.185±0.62 0.214±0.00 8.817±3.10 12.026±11.26 8.776±1.77
ENSMUST00000128041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.478±0.06 3.786±0.11 1.923±1.08 N/A
ENSMUST00000137143 N/A N/A 0.293±0.00 1.078±0.00 N/A N/A N/A N/A N/A N/A 0.165±0.00 N/A N/A N/A
ENSMUST00000142994 1.015±0.25 2.765±0.63 0.981±0.05 0.849±0.00 1.574±0.77 11.969±0.91 0.276±0.00 1.465±0.28 1.805±1.00 2.018±0.49 0.380±0.10 2.209±0.94 1.410±0.31 0.573±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MQ CIL_0008MQ_0002 VISTA 19:46318498-46919738
CIL_0005WL CIL_0005WL_0002 CGP 19:46341121-46395735

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009214 tmem180 transmembrane protein 180 protein_coding Danio_rerio
ENSG00000138111 TMEM180 transmembrane protein 180 protein_coding Homo_sapiens

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