C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005WL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138111-ENSG00000138107 CGP 9606 10:102461395-102502711
GeneTranscriptPositionBiotype
ENSG00000138107 (ACTR1A)
ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 		ENST00000369905 (ACTR1A-001) 102479229-102502711 protein_coding
ENST00000470322 (ACTR1A-003) 102479230-102483680 processed_transcript
ENST00000480947 (ACTR1A-005) 102484074-102488233 processed_transcript
ENST00000481044 (ACTR1A-006) 102483014-102502654 processed_transcript
ENST00000487599 (ACTR1A-002) 102479237-102502678 protein_coding
ENST00000494549 (ACTR1A-004) 102480795-102484374 processed_transcript
ENSG00000138111 (TMEM180)
transmembrane protein 180 		ENST00000238936 (TMEM180-001) 102461395-102477045 protein_coding
ENST00000369931 (TMEM180-201) 102461413-102472250 protein_coding
ENST00000428200 (TMEM180-004) 102466018-102468640 processed_transcript
ENST00000450947 (TMEM180-002) 102465981-102470026 processed_transcript
ENST00000469294 (TMEM180-003) 102471026-102472247 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0005WL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025227-ENSMUSG00000025228 CGP 10090 19:46341121-46395735
GeneTranscriptPositionBiotype
ENSMUSG00000025227 (Tmem180)
transmembrane protein 180 		ENSMUST00000086969 (Tmem180-001) 46356880-46375252 protein_coding
ENSMUST00000128041 (Tmem180-003) 46341121-46375252 protein_coding
ENSMUST00000128455 (Tmem180-005) 46356939-46367978 protein_coding
ENSMUST00000137143 (Tmem180-004) 46366734-46375252 retained_intron
ENSMUST00000142994 (Tmem180-002) 46356935-46375252 nonsense_mediated_decay
ENSMUSG00000025228 (Actr1a)
ARP1 actin-related protein 1A, centractin alpha 		ENSMUST00000040270 (Actr1a-201) 46376814-46395735 protein_coding
ENSMUSG00000065204 (Gm24610)
predicted gene, 24610 		ENSMUST00000083270 (Gm24610-201) 46359036-46359144 snoRNA
ENSMUSG00000099655 (RP23-62I23.3)
RIKEN cDNA 2310034G01 gene 		ENSMUST00000185278 (RP23-62I23.3-002) 46348899-46350302 unitary_pseudogene
ENSMUST00000189008 (RP23-62I23.3-001) 46348201-46350302 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WL_0001ENSG00000138107ENST00000369905ENST00000470322ENST00000480947ENST00000481044ENST00000487599ENST00000494549ENSG00000138111ENST00000238936ENST00000369931ENST00000428200ENST00000450947ENST00000469294CIL_0005WL_0002ENSMUSG00000025227ENSMUST00000086969ENSMUST00000128041ENSMUST00000128455ENSMUST00000137143ENSMUST00000142994ENSMUSG00000025228ENSMUST00000040270ENSMUSG00000065204ENSMUST00000083270ENSMUSG00000099655ENSMUST00000185278ENSMUST00000189008
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WL_0001ENSG00000138107ENST00000369905ENSG00000138111ENST00000238936ENST00000369931ENST00000428200ENST00000450947ENST00000469294CIL_0005WL_0002ENSMUSG00000025227ENSMUST00000086969ENSMUST00000128041ENSMUST00000137143ENSMUST00000142994ENSMUSG00000025228ENSMUST00000040270ENSMUSG00000065204ENSMUST00000083270ENSMUSG00000099655ENSMUST00000185278ENSMUST00000189008
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138107 ENST00000369905 43.077±0.00 33.136±0.00 4.302±0.00 40.999±14.58 23.585±14.37 23.053±12.07 20.303±13.19 21.738±17.32 13.958±2.91 31.944±22.14 58.459±45.41 26.373±9.92 49.621±6.05 45.051±2.12
ENST00000470322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138111 ENST00000238936 1.690±0.00 0.519±0.00 0.675±0.00 1.595±0.37 0.406±0.02 0.321±0.03 0.377±0.24 0.722±0.26 1.089±0.00 0.363±0.02 0.267±0.00 1.333±0.72 1.081±0.31 N/A
ENST00000369931 N/A N/A N/A N/A 0.309±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428200 N/A N/A N/A N/A 1.055±0.00 N/A N/A 0.960±0.00 N/A 1.850±0.00 N/A N/A 0.755±0.00 N/A
ENST00000450947 N/A N/A N/A N/A 0.579±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469294 N/A N/A N/A N/A N/A 0.442±0.00 N/A N/A 0.199±0.00 N/A 0.400±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025227 ENSMUST00000086969 3.929±0.83 8.440±1.37 1.279±0.25 3.022±1.36 2.536±1.08 10.355±2.67 1.090±0.22 9.724±1.17 5.035±1.97 4.185±0.62 0.214±0.00 8.817±3.10 12.026±11.26 8.776±1.77
ENSMUST00000128041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.478±0.06 3.786±0.11 1.923±1.08 N/A
ENSMUST00000128455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137143 N/A N/A 0.293±0.00 1.078±0.00 N/A N/A N/A N/A N/A N/A 0.165±0.00 N/A N/A N/A
ENSMUST00000142994 1.015±0.25 2.765±0.63 0.981±0.05 0.849±0.00 1.574±0.77 11.969±0.91 0.276±0.00 1.465±0.28 1.805±1.00 2.018±0.49 0.380±0.10 2.209±0.94 1.410±0.31 0.573±0.00
ENSMUSG00000025228 ENSMUST00000040270 54.047±10.75 42.810±2.45 37.528±1.09 84.381±17.10 44.810±6.21 50.341±4.80 30.401±3.25 35.098±0.88 23.236±3.15 50.850±1.03 26.913±0.97 47.546±2.08 55.907±10.74 84.708±21.02
ENSMUSG00000065204 ENSMUST00000083270 N/A N/A N/A 19.572±0.00 N/A N/A N/A N/A 27.965±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000099655 ENSMUST00000185278 N/A N/A N/A 0.437±0.00 N/A 7.068±1.62 N/A N/A N/A 1.155±0.00 N/A 5.723±3.09 0.080±0.02 0.251±0.04
ENSMUST00000189008 0.526±0.00 0.770±0.09 1.140±0.09 0.634±0.36 0.393±0.16 6.534±1.50 0.300±0.08 0.502±0.28 0.127±0.10 2.481±0.16 0.333±0.10 2.342±1.03 0.182±0.08 0.390±0.08

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