C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trophinin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025272 Tro 10090 - X:150645304-150657583 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087253 Tro-002 150645308-150657399 protein_coding
  ENSMUST00000087258 Tro-001 150645304-150657583 protein_coding
  ENSMUST00000112709 Tro-201 150645304-150657436 protein_coding
  ENSMUST00000148604 Tro-010 150653386-150657372 protein_coding
  ENSMUST00000151403 Tro-005 150645308-150657399 protein_coding
  ENSMUST00000163450 Tro-003 150649465-150657399 nonsense_mediated_decay
  ENSMUST00000163969 Tro-006 150645308-150657436 protein_coding
  ENSMUST00000164071 Tro-004 150645426-150655928 protein_coding
  ENSMUST00000165192 Tro-009 150651305-150652847 retained_intron
  ENSMUST00000169450 Tro-008 150649312-150651671 retained_intron
  ENSMUST00000171775 Tro-007 150649589-150651720 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087253ENSMUST00000087258ENSMUST00000112709ENSMUST00000148604ENSMUST00000163969ENSMUST00000165192ENSMUST00000169450
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087253 N/A N/A N/A 18.813±0.00 N/A N/A N/A 0.141±0.00 N/A N/A 0.036±0.00 1.039±0.00 N/A N/A
ENSMUST00000087258 1.003±0.82 0.677±0.26 0.589±0.00 16.193±4.97 0.274±0.11 0.366±0.11 0.255±0.00 0.212±0.00 0.241±0.22 0.412±0.00 0.041±0.02 3.806±3.23 3.825±0.78 0.117±0.00
ENSMUST00000112709 3.594±0.43 N/A 0.273±0.00 21.991±2.06 0.108±0.00 0.281±0.00 0.221±0.13 N/A 0.318±0.17 0.364±0.09 0.009±0.01 1.495±0.82 2.201±1.08 0.603±0.28
ENSMUST00000148604 N/A N/A N/A 54.411±0.00 0.795±0.10 0.511±0.00 0.400±0.00 0.304±0.08 0.111±0.06 N/A 0.044±0.01 4.263±1.52 7.471±4.85 2.033±0.00
ENSMUST00000163969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A
ENSMUST00000165192 N/A N/A N/A N/A N/A N/A N/A N/A 0.363±0.00 N/A 0.231±0.00 N/A N/A N/A
ENSMUST00000169450 N/A N/A N/A N/A N/A N/A N/A N/A 0.456±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0030308 IDA negative regulation of cell growth

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058212 ndnl2 necdin-like 2 protein_coding Danio_rerio
ENSG00000067445 TRO trophinin protein_coding Homo_sapiens

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