C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: charged multivesicular body protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025371 Chmp6 10090 + 11:119913441-119919548 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026434 Chmp6-001 119913810-119919548 protein_coding
  ENSMUST00000124199 Chmp6-003 119913830-119916094 protein_coding
  ENSMUST00000132197 Chmp6-002 119913441-119917008 protein_coding
  ENSMUST00000137055 Chmp6-006 119916731-119918628 retained_intron
  ENSMUST00000139814 Chmp6-005 119915822-119919048 retained_intron
  ENSMUST00000148232 Chmp6-004 119914015-119916701 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026434ENSMUST00000124199ENSMUST00000132197
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026434 19.977±2.59 31.474±11.66 17.156±1.91 18.248±6.96 23.635±8.68 57.007±5.72 10.941±1.93 38.486±8.25 13.732±3.02 26.123±2.20 15.543±0.58 29.112±11.14 40.513±12.95 20.915±8.35
ENSMUST00000124199 N/A 28.419±0.00 N/A N/A N/A N/A N/A N/A 10.705±0.00 N/A N/A N/A N/A N/A
ENSMUST00000132197 N/A N/A N/A 16.218±0.00 N/A N/A N/A N/A N/A N/A N/A 17.187±0.00 10.712±0.00 82.302±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042G CIL_00042G_0002 CGP 11:119602905-119919548
CIL_0003UC CIL_0003UC_0003 CGP 11:119913441-120006782

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005768 IEA endosome
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0047485 IEA protein N-terminus binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021202 chmp6b chromatin modifying protein 6b protein_coding Danio_rerio
ENSDARG00000097451 CHMP6 (2 of 2) charged multivesicular body protein 6 protein_coding Danio_rerio
ENSG00000176108 CHMP6 charged multivesicular body protein 6 protein_coding Homo_sapiens

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