C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: charged multivesicular body protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176108 CHMP6 9606 + 17:80991598-81009517 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325167 CHMP6-001 80991841-81000133 protein_coding
  ENST00000571457 CHMP6-004 80994644-81009517 protein_coding
  ENST00000572525 CHMP6-002 80991598-80999145 protein_coding
  ENST00000572778 CHMP6-003 80994581-80998670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325167ENST00000571457ENST00000572525ENST00000572778
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325167 8.673±0.00 12.185±0.00 0.493±0.00 3.252±2.71 8.076±0.00 2.327±1.39 4.684±0.00 7.975±0.00 3.865±3.65 2.626±2.12 2.877±2.47 7.940±5.89 16.736±6.45 5.430±1.23
ENST00000571457 N/A N/A 0.861±0.00 N/A 0.406±0.00 0.356±0.00 N/A N/A 1.708±0.00 N/A N/A N/A N/A 2.635±0.00
ENST00000572525 N/A 7.515±0.00 N/A 1.962±1.22 N/A 3.125±0.00 3.233±0.00 5.911±0.00 0.448±0.00 2.563±1.73 N/A 3.298±2.62 N/A 3.330±0.47
ENST00000572778 N/A N/A N/A N/A N/A N/A 0.233±0.00 1.512±0.00 N/A N/A N/A 0.386±0.00 N/A 2.406±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042G CIL_00042G_0001 CGP 17:80544819-81009517
CIL_0003UC CIL_0003UC_0002 CGP 17:80991598-81117432

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0007034 IEA vacuolar transport
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016197 TAS endosomal transport
GO:0019058 TAS viral life cycle
GO:0047485 IPI protein N-terminus binding
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021202 chmp6b chromatin modifying protein 6b protein_coding Danio_rerio
ENSDARG00000097451 CHMP6 (2 of 2) charged multivesicular body protein 6 protein_coding Danio_rerio
ENSMUSG00000025371 Chmp6 charged multivesicular body protein 6 protein_coding Mus_musculus

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