C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025626 Phf6 10090 + X:52912266-52956943 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000078944 Phf6-001 52912266-52956943 protein_coding
  ENSMUST00000101587 Phf6-003 52912295-52948500 protein_coding
  ENSMUST00000154864 Phf6-002 52912295-52955965 protein_coding
  ENSMUST00000177780 Phf6-005 52924569-52940616 processed_transcript
  ENSMUST00000179014 Phf6-004 52924571-52940635 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078944ENSMUST00000101587ENSMUST00000154864ENSMUST00000177780
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078944 1.877±0.86 0.786±0.36 4.420±0.26 16.093±10.09 1.238±0.33 1.006±0.29 0.627±0.36 1.388±0.32 2.759±1.94 1.662±0.72 1.036±0.15 2.179±1.64 1.389±0.54 1.057±0.08
ENSMUST00000101587 N/A 0.118±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.195±0.02 N/A N/A
ENSMUST00000154864 N/A 0.441±0.05 N/A N/A 0.480±0.15 N/A N/A 0.207±0.00 0.227±0.02 0.553±0.00 N/A 0.758±0.28 0.277±0.00 3.358±0.00
ENSMUST00000177780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.755±0.00 5.958±0.04 23.713±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JW CIL_0000JW_0002 CGP X:52791200-52956943
CIL_0000GG CIL_0000GG_0003 CGP X:52912266-53021659

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0015631 IEA tubulin binding
GO:0019899 IEA enzyme binding
GO:0042393 IEA histone binding
GO:0042826 IEA histone deacetylase binding
GO:0043021 IEA ribonucleoprotein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:0051219 IEA phosphoprotein binding
GO:0097110 IEA scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004046 phf6 PHD finger protein 6 protein_coding Danio_rerio
ENSG00000156531 PHF6 PHD finger protein 6 protein_coding Homo_sapiens

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