C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156531 PHF6 9606 + X:134373253-134428790 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000332070 PHF6-004 134373312-134428789 protein_coding
  ENST00000370799 PHF6-002 134373320-134420323 protein_coding
  ENST00000370800 PHF6-003 134373373-134415292 protein_coding
  ENST00000370803 PHF6-001 134373253-134428790 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000332070ENST00000370799ENST00000370800ENST00000370803
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000332070 N/A 0.514±0.00 0.570±0.00 2.516±0.91 1.317±0.49 1.727±1.38 0.461±0.17 1.346±0.00 1.194±1.05 1.008±0.39 N/A 2.614±1.20 0.466±0.02 1.454±0.37
ENST00000370799 N/A N/A 0.237±0.00 N/A N/A N/A 0.122±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000370800 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.827±0.00 N/A N/A N/A 1.779±0.00
ENST00000370803 2.579±0.00 2.891±0.00 0.456±0.00 2.286±0.00 1.486±0.69 0.813±0.00 0.622±0.32 1.545±0.70 0.701±0.35 1.686±0.00 0.597±0.23 4.820±1.64 1.690±0.89 4.065±1.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JW CIL_0000JW_0001 CGP X:134237047-134428790
CIL_0000GG CIL_0000GG_0002 CGP X:134373253-134520513

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0015631 IPI tubulin binding
GO:0019899 IPI enzyme binding
GO:0042393 IPI histone binding
GO:0042826 IPI histone deacetylase binding
GO:0043021 IPI ribonucleoprotein complex binding
GO:0044822 IDA poly(A) RNA binding
GO:0051219 IPI phosphoprotein binding
GO:0097110 IPI scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004046 phf6 PHD finger protein 6 protein_coding Danio_rerio
ENSMUSG00000025626 Phf6 PHD finger protein 6 protein_coding Mus_musculus

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